KEGG   Methanosarcina vacuolata: MSVAZ_2084
Entry
MSVAZ_2084        CDS       T03815                                 
Name
(GenBank) Excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
mvc  Methanosarcina vacuolata
Pathway
mvc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mvc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    MSVAZ_2084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mvc03400]
    MSVAZ_2084
DNA repair and recombination proteins [BR:mvc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MSVAZ_2084
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      MSVAZ_2084
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 Kinesin P-loop_SecA AAA_16 SWI2_SNF2 ACDC Flavi_DEAD Viral_helicase1
Other DBs
NCBI-ProteinID: AKB44353
UniProt: A0A0E3Q6K1
LinkDB
Position
complement(2654768..2656780)
AA seq 670 aa
MKSSDKTSQAVSNKISETLRDARYWDSPQFKLVSDFEPKGSQPQAIEKLVEGLTEGERYQ
TLLGVTGSGKTYTIANVINQVRKPTIVIAHNKTLAAQLYNEFREFFPENRVEYFVSYYDY
YQPESYLPARDQYIEKDAQINPKIEQMRLAATASLMSRQDVIVVASVSCIYGLGNPENFQ
KMGFELKVGDKVPRKEILQKLVEIQFERNDLELMPGRFRVKGDTIDIIPGYFDNIIRIEL
FGDEVDRISEVDKQTGQRTEEMDYFFVYPARHYVIPEEEQKSAIQSILEELEEHLPELGL
LESHRLKQRTIYDMEMIQETGSCKGIENYSRHFDHRQPGEQPFCLLDYFPEDFLMVIDES
HQTIPQLHGMYNGDRSRKKNLVDYGFRLPSAYDNRPLKFDEFEEYMKNVIFVSATPSDYE
HEHSAQIVEQIIRPTGLLDPEVEIRPLEGQVRDVMQEVRKIVERGDRALVTTLTKKLAEE
LTEYLARNEIKARYLHSDIKTMERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGIL
DADKEGFLRNSKSLIQIIGRAARNASSKVVLYADNMTDSIKSAVTETERRRSMQIAYNKE
HGIVPETIRKPIREKVVDITDTKHIPKTDIPNMIIELDTEMREAADRLDFERAIQVRELI
KKLEKEIKVV
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgaaatcttctgataagacatcccaagctgtatctaataaaatatccgaaacactacga
gatgcccgatattgggacagcccgcagttcaagctggtttccgattttgagccgaagggt
tcccagccgcaggcaatcgaaaaacttgtggaagggctgacagaaggagagcgataccag
accctgctaggagtaacagggtcagggaagacctataccattgcaaacgttataaaccag
gtcaggaaaccgaccattgttattgctcacaataaaacccttgccgcccagctttataat
gagttcagggagttcttccctgagaaccgggtggagtattttgtttcctattacgactat
tatcagcctgagtcctatcttcctgccagggaccaatatattgaaaaggatgctcagatt
aacccgaagatcgagcaaatgcggcttgctgctactgcttccctgatgtcacgccaggat
gttattgtagttgcatcagtatcctgtatctacgggcttggcaatcctgagaatttccag
aaaatggggtttgaattaaaggttggagataaggttcccagaaaagaaatcctgcaaaag
ctcgttgaaatacagtttgagcgaaacgaccttgaacttatgccagggcgcttcagggta
aaaggagataccattgatattattcccggatactttgacaatattatccggattgagctc
ttcggagatgaggtcgaccggatttctgaagtggacaagcagaccggtcagcgaacggaa
gaaatggactatttctttgtttatcctgcaaggcactatgtaattcctgaggaagagcag
aaaagtgcaattcagtccatcctcgaagagcttgaagaacatcttcctgagcttggtctt
cttgagtcgcacaggttgaagcagcgcacgatttatgatatggaaatgattcaggaaacc
ggcagttgcaagggtattgaaaactactcaagacattttgaccacagacagccgggagaa
cagcctttctgcctgcttgactatttccctgaggatttcctgatggtcatcgatgagagt
caccagaccatccctcagcttcacgggatgtacaacggagaccgctcaaggaagaagaac
cttgttgactatgggttcaggcttccgagtgcctacgataacaggcctctgaagttcgat
gaatttgaggagtacatgaaaaacgtgatttttgtctcggcgactccttcagactatgaa
catgagcattcagctcagatcgtggagcagattatccgtcctacaggacttctcgaccct
gaagtggaaattcgtcctcttgaaggtcaggtaagggacgttatgcaggaagtacggaag
attgtggaaaggggagaccgtgctcttgtaactaccctgacaaagaagcttgcagaagaa
ctgactgagtaccttgccaggaatgaaatcaaagctcgttacctgcactcggacattaaa
acaatggaaagaactgagattatccgcgagctccgccttggcaaattcgatgtccttgtc
gggatcaacctgctcagggagggacttgatattccggaagtgggtttcattggcatcctg
gatgcagacaaagaaggcttccttagaaactcaaaaagccttatccagatcataggccgc
gcagcccggaacgccagctcgaaggttgtcctgtatgccgacaatatgacggattctatc
aaaagtgccgttacagagacagaacgccgccgctccatgcagattgcctataataaggaa
cacggcatcgtcccggaaactatcaggaaacccatcagggaaaaggtcgtggatatcact
gacaccaaacacatcccgaaaaccgatattcccaatatgattatcgaactggataccgaa
atgagggaagctgctgacaggctggacttcgaaagggcaattcaggtaagggaattgata
aagaagctggagaaagagataaaagtagtctga

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