Mannheimia varigena USDA-ARS-USMARC-1388: X875_10000
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Entry
X875_10000 CDS
T03029
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mve03016
]
X875_10000
Enzymes [BR:
mve01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
X875_10000
Transfer RNA biogenesis [BR:
mve03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
X875_10000
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF2274
TRAM
Hemolysin_N
Motif
Other DBs
NCBI-ProteinID:
AHG79618
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Position
complement(1053047..1055023)
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AA seq
658 aa
AA seq
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MFQNNPLLAQLKQQIEANKEYVEGKVKASDKSFGFLECDKESFFIPPTEMKKVMHGDTVK
AVVKREGDKASVEIDSLIEPMLERFIAQVRYNKEGKLQLAVDHPSIKQNLPANTHKKVTE
TLKNGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAPWWVTLARHEQPREPVANEKS
YELHDELEREDLTHLYFTTIDSPSTQDMDDALFVEPIEENGLQAGWRLVVAIADPTAYIP
ENSNIEKAARQRCFTNYLPGFNIPMLPRELSDDLCSLVPNEKRPALVGFIETDLEGNLTK
EANFTLAWVESKDRLAYDNVSDYLENVENAWQPQSAETKQQIDWLHQFTQARIQWRAKNA
LLFKEQGDYKFELNEDGSVKDIHVEYRRIANQMIEESMILANICCAKFLSENAKTGVFNT
HSGFDSKNYELVKSFLLQTLATDENREALAERYSAERLMTLDGYCEMQRDIQDFPERFLE
LRLRRYLTFAEFKAEVAPHFGLGISHYATWTSPIRKYGDMVNHRLIKQVLLGKQASAVEE
SVLTRLQEARRQNRLVERDIADWLYAHYLFPMVEQAVEFECEIADVSRGGLRAKVINNGA
QIFVPFSTLHDNKDEMDYRQEELALYIKGEKAYQIGQEVKVKLTEVRVETRSIVGNII
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaacaatccccttttagcccagctaaagcaacaaatcgaagcgaataaagag
tatgtggaaggcaaagtgaaagcctccgataaatcttttggctttttagaatgtgataaa
gagagcttttttattccacctacggaaatgaaaaaagtgatgcacggagacaccgtgaaa
gcggtggtaaaacgtgagggcgataaagcctcggtggaaatcgacagcttaattgagccg
atgctagaacgttttatcgcccaagtgcgttacaacaaagaaggcaaattgcaactggcg
gtagatcacccaagcattaagcaaaacctgcctgccaacacgcataaaaaagtgactgaa
accttaaaaaatggcgactgggttgtggctcaactgaaaacgcacccattgcgtgatgac
cgttttttcttcgctcaagtaactcaatttatctgtaaagagagcgacaatttcgctccg
tggtgggtaacactcgctcgccacgaacagcctcgtgagccagtggctaacgaaaaaagc
tacgaattgcacgatgaactagagcgtgaagatttaacccatctctacttcaccaccatc
gacagccctagcacgcaagatatggacgatgccttgtttgttgagccaatcgaagaaaac
ggcttacaagccggctggcgtttagtggtggcgattgccgatccaaccgcttatattccg
gaaaattccaacatcgaaaaagccgctcgccaacgttgtttcaccaactatttgccggga
tttaacattccaatgttgcctcgtgaactgtcagacgacctctgctcgcttgtgccaaat
gaaaaacgccctgctctcgtgggctttattgaaactgacctagagggcaatttaaccaaa
gaggcgaatttcactttagcgtgggtggaatcaaaagatcgtttggcttacgacaacgtg
tctgactatcttgaaaacgtggaaaatgcgtggcagccgcaatcggcagaaaccaaacag
cagatcgactggctacaccaattcacccaggctcgtattcaatggcgagcaaaaaatgcg
ttgcttttcaaagagcaaggcgattataaatttgagttaaacgaagatggctcggtgaaa
gatattcacgttgaataccgccgcattgctaaccaaatgattgaagagtcgatgatcctc
gctaatatttgttgtgcaaaattcttgtcggaaaatgccaaaaccggcgtattcaacacg
cactcaggttttgatagcaaaaattacgagttagtgaaatcgttcttactccaaacctta
gctaccgatgaaaaccgtgaagccttggcagaacgttattcggctgaacgcttgatgacc
ttagacggctactgcgaaatgcaacgtgatattcaagatttcccagaaagattcttggaa
ctccgccttcgccgttacttaactttcgctgaatttaaagccgaagttgccccacatttt
ggcttaggtattagccactatgcgacttggacatcgccaatccgtaaatatggcgatatg
gtaaaccaccgcttaatcaagcaagtattgctaggcaaacaagcctcagctgtagaagaa
agcgtactcactcgcttgcaagaagcccgccgccaaaatcgcttggtggaacgtgatatt
gccgactggctctacgcccactacctattcccaatggtggaacaagcggtcgaatttgag
tgcgaaattgcagatgtatctcgtggtggcttgcgtgcaaaagtgattaacaacggagct
caaattttcgtaccattctcaactttacacgacaacaaagacgaaatggactaccgccaa
gaagagctggctctttacatcaaaggcgaaaaggcctaccaaatcgggcaagaagtgaaa
gtgaagctcaccgaagttcgcgtagaaactcgctcgattgtgggcaatattatctaa
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