Mannheimia varigena USDA-ARS-USMARC-1388: X875_10460
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Entry
X875_10460 CDS
T03029
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
X875_10460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mve03400
]
X875_10460
Enzymes [BR:
mve01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
X875_10460
DNA repair and recombination proteins [BR:
mve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
X875_10460
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
X875_10460
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
X875_10460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Chromo_2
KI67R
GAGA
Motif
Other DBs
NCBI-ProteinID:
AHG79664
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All DBs
Position
1099966..1101513
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AA seq
515 aa
AA seq
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MSKNFTFFFYDYESFGVSPASDRPAQFAGIRTDENFNIVGEPVMFYCKQTPDYLPSPEAV
MVTGITPQQCNAEGLSEPEFAARIHAEFSQPNTCTIGYNNIRYDDEMTRYTFFRNFYDPY
EYSWKNGNSRWDLLDLVRACYALRPDGIEWERDENGVPSFKLENLTKANGIAHENAHDAM
SDVYATIAMAKLIKEKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA
WVVPLAWHPTNPNAVIVCDLSGDMNGLLNENAETLRQRLYTKREELAENELTVPLKLVHI
NKCPILAPAKTLLPENAERLGIDRAFCLENLKALKAQKSLVREKVLEIFHDERTFEPSAN
VETTLYDGFFSTADKNNMTILRNLPPEELANHGLKFEDPRVEALLFHYRARHYPQTLSRA
EQVKWQKYCNQQIDAKAEQFAKSIDELFQQHHDNPEKVKLLENLTAYAELISQKQAVVYA
KNSAKEEKLVSDLNKVAEQNLDKAEKLKILKELIK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaaatttcacttttttcttttacgattacgaaagttttggggttagcccggct
tctgaccgtccggcacagtttgccggcattcgtactgatgagaattttaatattgtcggt
gagccggtgatgttttattgcaaacaaacgccggactacctgcctagcccggaagcggtg
atggtgacaggtattacaccgcaacaatgtaacgctgaagggttgtctgaacccgaattt
gctgctcgtattcacgcagaatttagccagccaaacacttgcaccatcggttataacaat
atccgctatgacgatgaaatgacccgctacacctttttccgcaatttttacgatccgtac
gaatacagttggaaaaacggtaattctcgctgggatttgttggatttagtgcgggcttgt
tatgcactgcgtccggacggcattgagtgggagcgagatgaaaacggcgtgccgagtttt
aaattagaaaatttgaccaaagcgaacggcattgcccacgaaaacgctcacgatgcgatg
tcggacgtttacgccaccattgcaatggcgaaattgattaaggaaaaacagccgaaatta
ttcgattttttctttaatttacgcagcaaaaaagaggtggaaaaactgattgacacaggt
gaaatgacgccacttgttcacgtttcgggaatgttgggaaactaccgtggcaacaccgct
tgggttgtgccgttggcatggcacccgactaatcccaatgcggtgattgtgtgcgattta
tcgggcgatatgaacggtttactcaatgaaaatgcggaaactctacgccaacgcctatat
accaaacgtgaggagttagccgagaatgaactcaccgtaccgctgaaattagtgcatatc
aataaatgcccgattttagccccggcgaaaacgttattacctgaaaatgccgaacgactt
ggaattgaccgtgctttctgtttggaaaatttaaaagcgttaaaagcacaaaaatcgcta
gtgcgtgaaaaagtgctggaaatttttcacgatgaacgtacattcgagccttccgctaac
gtagaaactacgctttatgacggttttttctctaccgccgataaaaacaatatgacaatt
ttacgcaatttaccgccggaagaactggcgaaccacgggttgaaatttgaagatcctcgt
gtggaagcgttgctattccattatcgggcgaggcattatccgcaaacgctcagccgagcc
gagcaagtcaaatggcagaaatattgcaatcagcaaattgatgcaaaagcagagcagttt
gccaagtctattgatgagctgttccaacagcatcacgataatccggaaaaagtaaaatta
ttggaaaatttgaccgcttacgccgagctaatttcccagaaacaagcggtcgtttatgcg
aaaaattctgcaaaagaggaaaaattagttagcgatctcaataaagtcgctgagcagaat
ttagacaaagcagaaaagctaaaaatattaaaggaattaatcaaatag
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