Mannheimia varigena USDA-ARS-USMARC-1388: X875_11160
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Entry
X875_11160 CDS
T03029
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mve03016
]
X875_11160
Enzymes [BR:
mve01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
X875_11160
Transfer RNA biogenesis [BR:
mve03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
X875_11160
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Knl1_RWD_C
DUF3793
COG6_N
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
AHG79734
LinkDB
All DBs
Position
complement(1179339..1180463)
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AA seq
374 aa
AA seq
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MTSLICYNWIDTNEQLVAVCEEAKKANAVALDTEFIRTRTYYPILGLIQLYDGKQVSLID
PTTISDFSPFVSLLANKNTVKVLHACSEDLEAFEHQFKQLPEPMLDTQIMAGFSGIGISM
GFAKLVSHYLEVELDKGASRTDWLARPLTNEQLQYAAADVWYLLPIYEKLSGVLEKSNWL
NAVKEECEAISAKIQRVEDKTKAYKNIANAWRLNQQELAILQVLAKWRIDEAEKRDLALN
FVVKEANLFQIAKIQPKHTSQLLEFMHPNEVRIHGKKILWLVEQGKAVQPELYPKLIKRL
IDEKGYKYNMQLMLQKLAEIRPLDLAPELVASKRQLNQLFKWFIDGRSQEKMPELLMGWR
KPFGEQLLSVLLQN
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgacatctttaatttgctataactggatcgatacaaacgaacaactagtagcagtatgc
gaagaggctaaaaaagcaaatgccgtagcactagacacggaatttatccgtactcgtact
tattatccgatattaggtttaattcagttatatgatggtaaacaagttagcttaattgat
ccgactacaatttccgatttttcgccttttgtctcactattagcaaataaaaatactgtg
aaagtgctacacgcctgtagtgaagacttagaagcttttgaacatcaattcaaacaatta
ccagaaccgatgcttgatacccaaattatggcaggtttttcaggcattgggatatcaatg
ggctttgcgaaattggtctctcattatttagaagttgagcttgataaaggtgcttctcgt
actgattggcttgcccgacctttaaccaatgagcagttgcaatatgctgctgcagatgtc
tggtatttattgccgatttacgaaaaactatctggcgtattagaaaagagcaactggcta
aatgcagttaaagaagagtgtgaggcaatatcagctaaaattcagcgagttgaagataaa
accaaagcctataaaaacattgcaaatgcgtggcgattaaatcagcaagaattagctatc
ttacaagtgttagctaaatggcggattgatgaagcagaaaaacgtgatcttgcgttaaat
tttgtggttaaagaagccaatttatttcaaatagcaaaaatacaaccaaaacatacgtct
caattattagaatttatgcaccctaacgaagtgagaattcacggcaaaaaaatcctctgg
ttagtcgaacagggtaaggcggttcagcctgagctttatccaaaactgatcaaacgttta
atcgatgagaaaggctacaagtacaatatgcagttaatgctgcaaaaattggctgaaatt
cgaccgcttgatcttgccccagagttggttgcaagcaaacgccaattaaaccaactattt
aagtggtttattgatggcagatcacaagaaaaaatgcccgagttgttaatgggttggcgt
aaacccttcggcgaacagctattatcagttttattgcaaaattaa
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