Mannheimia varigena USDA-ARS-USMARC-1388: X875_12790
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Entry
X875_12790 CDS
T03029
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mve03019
]
X875_12790
Enzymes [BR:
mve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
X875_12790
Messenger RNA biogenesis [BR:
mve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
X875_12790
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
SLFN-g3_helicase
ResIII
NACHT
nSTAND_NTPase5
AAA_23
SRP54
ABC_tran
T2SSE
AAA_30
WHD_HA2
PhoH
DNA_ligase_A_N
AAA_25
TsaE
Motif
Other DBs
NCBI-ProteinID:
AHG79897
LinkDB
All DBs
Position
1364433..1368347
Genome browser
AA seq
1304 aa
AA seq
DB search
MMKKNLRKNEQNQPLVKLENITTSDFRRLLGRLKGAENIKNEDNKRSVLDEILQDLTVCQ
ARFFARQSHAQNLKIDYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLEL
GRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKVRFNDQVSENSLVKLMTDGI
LLAEIQHDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERF
SKHFNNAPIIEVSGRTFPVEVRYRPIVEEEEQDQLQGILNAVDELQSEGRGDILIFMNGE
REIRDTAEALQKQELRHTEILPLYARLSATEQQRIFQPSGGLNRIILATNVAETSLTIPN
IKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICIRLYSEEDFNA
RPQFTDPEILRTNLASVILKMTSLGLSDIASFPFVDAPDSRQIQDGIRLLEELQAIIPNR
NGDRLSTHTLTLIGKQLAQLPVDPRLGRMIIEAAKNGSLHEVMMIVSALSIQDPRERPQE
KQQSADDKHRRFADKDSDFLAFVNLWKFIQEQQKELTKNQFRKLCQKDYLNYLRVREWQD
IYHQLRLSVREMGLPINSLDANYQQIHTALLTGLLSHIGLKDNEKMHYLGARNAQFFIFP
NSMLFKKQPKWIIASELVETTKLWARTVAKIEPEWIEPLAQHLVKSSYSEPHWSKSKGAV
MAYEKVSLYGLPIVMSRPINYGSIDPETCREIFIRSAMVEGDWHNNYKFFQENNRLIKEV
EDLEHKSRRRDILVDEQVLFDFYDQRVGTEVVSSKHFDTWWKQASKKEPELLNFEKSFLI
NEDANKVSELDFPNFWHQGQLKFKLSYQFEIGQDHDGVTVHIPLPLLNQVEPEGFDWQIP
GLRHELVVSLIKSLPKATRRNFVPAPNYADAFLAKAEPLAKPLLESLTYELRRMTGVTVE
SELWDLSQLPAHLRMTFRVIDEKGKKIAESENLDDLKFALKDQVQTTLSNIADDGIEQSG
VHVWSFAELPQFYEQKKQHFSVKAYPAIVDEKESVGIKLFETEFEQARAMQAGLRRLLLL
NVPSPIKYLHEKLPNKAKLGLYFAPFGKVMDLIDDCIACAVDKLVEEFGGFVWNEEKFQA
LHEFVRANLNDTTAGIALQVEKCLTLAFEINKRMKGKMDFTMAFAMSDIKAQIEGLIYPE
FVTKTGHHRLADLYRYLSAIDKRLDKLGTDTNTDRAKMLRVEQVQNAYKQLLAKLPKSKA
IPDNILEIRYMIEELRVSLFAQQLGTKYPTSDKRILNTIIVLKK
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgatgaaaaagaatttgcgaaaaaatgaacaaaatcaaccgcttgtaaaactggaaaat
atcacaacgagcgattttcgtcgcctactcggtagattaaaaggggcagagaatattaaa
aatgaagataacaagcggtcggttttagacgaaattttgcaagatttaaccgtttgccaa
gctcgtttttttgctcgccaaagccacgcccaaaatctcaaaatcgactaccctgatcta
cctgtttccgctcgtcgtgaggaaattttaaagctaattgccgaaaatcaggtagtggta
attgcaggggaaacaggttcgggtaaaacaactcagcttccgaaaatgtgtttggaactc
ggacgaggtgtgaaaggcttaattggtcatactcaacctcgccgaattgcagcccgctcg
gtagcaacccgtattgccgaagagctgaaatcggagctgggcgagacggtcggttacaaa
gtccgctttaacgatcaagtcagtgaaaacagcttagtcaaactgatgacagacggtatt
ttactggctgaaattcagcacgaccgatatcttaatcaatatgatacgttaattatcgac
gaagcccacgaacgttcgctgaacaacgatttcatcttgggctatttaaaacaaattctg
cataaacgccctgatctgaaagtaatcattacctcagccaccattgatgtagaacgcttt
tccaaacattttaacaatgcccctattattgaagtgtctgggcgaactttccctgttgaa
gttcgctaccgaccaattgtagaagaagaggaacaagaccaattacaaggtattttaaat
gccgttgatgagctacaatctgaaggaagaggcgatattctgatttttatgaacggcgaa
cgggaaatccgtgataccgccgaagctctacaaaagcaggagctccgccataccgaaatt
ctgccactttacgctcgcttgtcagctacggagcaacaacgaattttccagccgagtggt
gggttaaaccgcattattttagccactaatgtagcagaaacctcactgacaattccgaat
attaaatatgtaatcgacaccggcacggctcgtatttcccgctatagctatcgtactaaa
gtacaacgcttaccgattgaaccgatttcccaagcttctgctaatcagcggaaagggcgt
tgtgggcgtatttcggaagggatctgcatccgtctctactcagaagaggatttcaacgct
cgtcctcaatttaccgatccggaaattttgcgaaccaaccttgcgtctgtcattttgaaa
atgacctcgctcggactgagtgatattgcatctttcccatttgtcgatgcacctgatagc
cgtcaaattcaagatgggattaggttgttggaagagttgcaagcaattattcctaaccga
aacggagatcgcctgtctacacatacattgacactaatcggtaaacagctcgctcaacta
cctgtcgatcctcgtttaggcagaatgattattgaggcagcgaaaaacggatcgttgcac
gaagtgatgatgatagtgtccgctctctccattcaagatccgcgtgaacgtccgcaggaa
aaacagcagtcggcagacgacaaacatcgtcgttttgctgacaaagattctgatttcttg
gcattcgtgaatttatggaaatttattcaagagcaacaaaaagagctcaccaaaaaccag
ttccgcaaactctgccagaaggattatttgaactatctgcgggtacgtgagtggcaggat
atttatcatcaacttcgcctttctgtacgagaaatgggcttgccgatcaacagcttagat
gcaaattatcagcaaattcataccgctttactcaccggtttgctctcacatatcggcttg
aaagataacgaaaaaatgcactatttgggggcaagaaacgctcagtttttcattttccca
aactcaatgcttttcaaaaaacagccaaaatggattatcgcctcagagttggtagaaacc
accaaactttgggcgagaacggtagcgaaaatcgagcctgaatggattgagccgctcgct
caacatttggtgaaaagcagttacagcgagccgcattggtctaaatcaaaaggggcggtg
atggcgtatgaaaaagtgtcgctgtacggcttgccgattgtgatgagccgtccgatcaat
tatggctcaatcgatccggaaacctgccgtgagatttttatccgctcggcaatggtggag
ggcgattggcacaataattacaaatttttccaagaaaataaccgcttgatcaaggaagtg
gaagacttggaacataaatctcgccgccgtgatattttggtggacgagcaagttctgttt
gatttttacgatcaacgtgtcggcaccgaggtggtttccagcaagcatttcgacacttgg
tggaagcaagccagcaaaaaagagcctgaattgctcaattttgaaaaatcgtttttgatt
aatgaagatgccaacaaggtgagcgaactcgacttcccaaatttctggcatcaaggacag
cttaaattcaaactgagttatcaatttgagatcgggcaagatcacgatggtgtgacggtg
catattccgctgccgttactcaaccaagttgagccggagggatttgactggcaaattccg
gggctacgtcacgagctcgtggtgtccttgattaaatcgttgccgaaagccactcgtcgc
aattttgtgccggctccaaactatgccgatgcgttcctcgccaaagccgagccgttggca
aaaccgctgctggaaagtttaacttacgagcttagacgaatgacaggcgtaactgtagaa
tctgaactttgggatttaagccaactgccagctcatttacgaatgactttccgtgtgatt
gatgaaaaaggcaaaaaaatcgccgaaagcgaaaacctagacgatctgaaatttgcgttg
aaagatcaggttcaaactaccctttccaacattgccgatgacggtattgaacaaagtggt
gtgcatgtttggagcttcgccgaactgccccaattctacgagcagaaaaagcagcatttc
agcgtaaaagcctaccctgcgattgtggatgaaaaagagagtgtcggcatcaaattgttt
gaaaccgaatttgaacaggctcgtgcgatgcaagccggacttcgccgtttgttgctatta
aatgtgccttcgccaatcaaatatttacacgaaaagctgccgaataaagcgaaattaggc
ttatatttcgccccatttggcaaggtgatggacttaattgatgactgcattgcgtgtgcg
gtggataaattagtggaagaatttggcggttttgtgtggaatgaggaaaaattccaagcg
ttacacgaatttgtgcgggcaaacctcaatgacacaacggctggcattgcgttacaggtt
gaaaaatgtttaaccctcgcctttgaaatcaacaaacgaatgaaaggtaaaatggatttc
acgatggcatttgcgatgtcggacatcaaagctcaaatcgaggggctgatctaccctgaa
tttgtcaccaaaaccggacatcaccgcttggcggatttgtatcgctacctcagtgcaatt
gacaaacgtttggacaaactcggtacagacaccaataccgaccgagccaaaatgttgcgt
gtggaacaggtgcaaaacgcttacaaacaactgctcgccaaattgccgaaatcgaaagcg
atccccgataatattttggaaatccgctatatgatcgaggaactgcgagtcagtctgttt
gctcaacagttggggacgaaatacccgacttcagataagaggattctaaacacaattatt
gttctaaaaaaataa
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