Mannheimia varigena USDA-ARS-USMARC-1388: X875_17680
Help
Entry
X875_17680 CDS
T03029
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
X875_17680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mve03021
]
X875_17680
Transcription machinery [BR:
mve03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
X875_17680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
Cwf_Cwc_15
Motif
Other DBs
NCBI-ProteinID:
AHG80382
LinkDB
All DBs
Position
complement(1868004..1869875)
Genome browser
AA seq
623 aa
AA seq
DB search
MEHQADQQLEQQSQLELLITQGREQGYLTISEVHDHLPEELVDAEQIEDIIQMINDMGIQ
VLEVAPDADDLLLAENIADEDVVEEATKVLSTVESELGRTTDPVRMYMREMGTVELLTRE
GEIDIAKRIEEGINEVQCAIAEYPEVLTGLLECYAQVEGGEMRLSDLVTAFVDPNILEEA
PLEELDAELNDDEESDSVAVVDDENEDEESDSSSDNSDDSSIDPELAREKFEALRNQHEK
VLLAIQKHGRTSKKSKEQIEILSNIFREFRLVPKQFDLLVASMQKLMKQVRVEERQIQRY
AVEYAGMKKADFLKAFQGHELSEEWIEKAINAKKNAAPKLANYVDNIRINIANLQNLEQT
SGLTISQIREIGGRIASGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQC
LQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLEL
PLDSATAESLRMATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSETLRSFLDD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggaacaccaagcagatcaacaattagaacagcaatcccaattagaacttctgatcaca
caaggacgagaacaggggtatttaacgatttctgaagttcacgatcacttaccggaagag
ttagtggatgcggagcagattgaagatatcattcagatgatcaatgatatggggatccag
gtcttagaggttgccccagatgcggacgatttactccttgctgaaaatatcgctgatgaa
gatgtggtagaagaagcgacaaaagtactttccaccgtagaatcagagttaggtagaacg
actgaccctgtgcgtatgtatatgcgtgagatggggacggttgagcttttaactcgtgaa
ggtgaaattgatattgcaaaacgtattgaggaagggattaatgaagttcaatgtgcaatt
gcagaatatccagaagtattaacagggcttttagaatgctatgctcaagttgaaggcggt
gaaatgcgcctttctgatttggtaacggcatttgttgatccaaatattttggaagaagca
cctttagaagaacttgatgctgaattaaatgatgatgaagaatctgatagtgtcgctgtt
gttgatgacgaaaatgaagacgaagaaagcgatagcagctcagataacagcgatgatagc
tcgattgatcctgaattagcgcgggaaaaatttgaagctctgcgtaaccaacacgaaaaa
gtattgttagcgattcaaaaacacggtagaaccagtaaaaaatcaaaagagcagattgaa
attttatctaatattttccgtgaattccgcttagtgccaaaacaatttgatttattagtt
gcctctatgcaaaaactaatgaaacaagtgcgtgtagaagaacgccagattcaacgttat
gcggttgaatatgcaggtatgaaaaaagcggacttcttaaaagcattccaaggacacgaa
ttaagcgaagaatggatcgaaaaagcgattaacgcgaagaaaaatgcggcaccaaaactt
gctaattatgtagataatattcgtattaatatcgcaaatttacagaatttagaacaaact
tcaggtttgaccatttcccaaatccgtgaaattggcggacgcattgctagcggtgaactg
aaagctcgccgtgcgaaaaaagagatggtggaagcgaacttacgtttagtgatctcgatt
gcgaagaaatacaccaaccgtggtttacagttcttggatttaatccaagaaggtaatatc
ggtttgatgaaagcggtggataaatttgaatatcgtcgtggctataaattttcaacctat
gcaacctggtggattcgtcaggcaattacccgttcgattgcagatcaggctcgaaccatc
cgtattccggtgcatatgattgaaactatcaacaaacttaatcgtatttctcgccaatgt
ttgcaggaaatggggcgtgaagcgacaccggaagagttggcagagcgtatgggaatgccg
gaagataaaatccgaaaagtgttgaaaattgctaaagaaccaatttcaatggaaactcca
attggtgatgatgacgattcacatttgggtgatttcattcaagacgaaagccttgaatta
ccactagattccgcaaccgctgagagcttgcgtatggcaacaaacgaagtgctggaaggt
ttaactccacgtgaggcaaaagtattacgtatgcgtttcggtattgatatgaacaccgac
catacgcttgaagaagtaggtaaacaatttgatgtaacccgtgagcgtattcgtcagatt
gaagcaaaagcgttacgtaaattacgccatccaagccgttcagaaaccttacgcagtttc
ctagatgattaa
DBGET
integrated database retrieval system
