Mannheimia varigena USDA-ARS-USMARC-1388: X875_19870
Help
Entry
X875_19870 CDS
T03029
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X875_19870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mve03021
]
X875_19870
03400 DNA repair and recombination proteins [BR:
mve03400
]
X875_19870
Enzymes [BR:
mve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X875_19870
Transcription machinery [BR:
mve03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X875_19870
DNA repair and recombination proteins [BR:
mve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X875_19870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF6571
FG-GAP_3
Motif
Other DBs
NCBI-ProteinID:
AHG80601
LinkDB
All DBs
Position
complement(2106637..2107614)
Genome browser
AA seq
325 aa
AA seq
DB search
MTEFLKPHLVNIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTDVEIDGV
LHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTLNKSGIGPVTAADITHDGDVEIV
NPDHVICNLTDKNASINMRIRVQRGRGYVPASARLHTQNDDRPIGRLLVDARFSPVDRIA
YNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIRRAATILAEQLAAFVDLRDVRQPEVKE
EKPEFDPILLRPVDDLELTVRSANCLKAETIHYIGDLVQRTEVELLKTPNLGKKSLTEIK
DVLASRGLSLGMRLENWPPASIAED
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaatttttaaagccgcacttagtgaacattgaacaaattagttcaactcacgct
aaagtgacattagagccgttagaacgtggttttggccatacattaggcaatgcacttcgt
cgcattttactttcatctatgccgggttgtgcagttactgacgttgaaattgatggggta
ttacatgaatacagcagcaaggaaggcgttcaggaagatattcttgaggtattattaaac
cttaaaggtctagcggtaaaagtgcaaaataaagatgatattattttgacactaaataaa
tctggaattggccctgtaactgcagctgacatcacacacgatggcgatgtagaaatcgta
aatccagatcacgttatttgtaacttaacagataagaacgcatcaattaatatgcgtatt
cgtgttcaacgtggtcgtggttatgtgcctgcatcagcacgtcttcatactcaaaacgat
gaccgtccaatcggtcggttattagttgatgcacgtttctcaccagtagaccgcattgct
tacaatgtcgaagctgctcgtgttgaacaacgtacagacttagataaacttgttattgag
atggagactaatggtacattagatccagaagaggctatccgtcgtgctgcaacgatttta
gcagagcaacttgctgcattcgttgatttgcgtgatgttcgtcaacctgaagtgaaagaa
gaaaaaccggagtttgatcctattcttcttcgcccagtagatgacttagagctgacagtt
cgttctgctaactgtttaaaagcagagacaattcactatatcggtgatttagtacaacgt
acggaagtagaacttctcaaaacccctaacttgggtaaaaaatctcttacagagatcaaa
gatgttcttgcttctcgtggcttatcactcggtatgcgccttgaaaactggcctcctgca
agcattgcagaagactag
DBGET
integrated database retrieval system
