Mannheimia varigena USDA-ARS-USMARC-1388: X875_2940
Help
Entry
X875_2940 CDS
T03029
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mve03016
]
X875_2940
Enzymes [BR:
mve01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
X875_2940
Transfer RNA biogenesis [BR:
mve03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
X875_2940
Prokaryotic type
X875_2940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Cas6_I-A
Csm1_N
Motif
Other DBs
NCBI-ProteinID:
AHG78914
LinkDB
All DBs
Position
complement(306555..307574)
Genome browser
AA seq
339 aa
AA seq
DB search
MQLNYLYSAPQTVGRLKAEFADFIVREELGYELSGEGEFVAVKIRKTNANTLFVGEKLAK
FAGISERDMGYAGLKDRYAITEQWFCLHLAGKETPDFSTFECEGVEILEVTRHNRKIRVG
ALEGNHFELLLRDVVESEDLNYRLQQLQAVGFPNYFTEQRFGRDGHNLTQAQRWAKGEIV
VKDRKKRSFYLSAARSEVFNLVVSQRISDGLMHQVLENDYVQLAGSNSFFSVTENEIAES
QDRLDRADLLLTAPLIGEKSLETTANSAEKTIIEQHKELVELMKKERMSTARRAMICKPK
GLEWQFETDGLRLKFFLDSGSYATGLVRELIRLSEENKV
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaactatttatactccgcccctcaaactgttgggcgtttaaaagccgaattt
gccgattttatcgtgcgtgaagaattaggatacgaactttctggtgaaggcgaatttgta
gcggtgaaaatccgcaaaactaacgctaacacgctttttgtcggcgaaaaattagcgaaa
tttgccggtatttccgaacgggatatgggctacgcaggcttgaaagatcgctacgcgatc
accgagcaatggttctgcttgcatttagcaggcaaagaaacacccgatttctctactttt
gaatgtgaaggcgtggaaattttagaggttactcgccacaatcgcaaaatccgtgtcggg
gcgttggagggcaaccatttcgagctgttattgcgtgatgtggtggaaagtgaagatctc
aactatcgcctgcaacagctacaagcggtcggatttcccaattattttaccgaacaacgt
ttcgggcgagatgggcacaacctcacccaagctcaacgctgggcaaaaggcgaaattgtg
gttaaagatcgcaaaaaacgcagtttttatctctccgccgctcgctccgaagtgtttaat
ttagtggtttcccaacgtattagtgatggcttgatgcatcaagtattagagaatgattat
gttcaactggctggctcaaacagctttttctccgtgaccgaaaatgaaatcgctgaaagc
caagatcgcctagatcgagccgatctattattaaccgctccgctgatcggcgaaaaatcc
ctcgaaaccaccgccaattccgccgaaaaaacgattatcgaacagcataaagagctagtc
gagctaatgaaaaaagagcgaatgagcactgcccgccgggcaatgatctgcaaacctaaa
ggtctcgaatggcaatttgagacagatggattaagattaaaattctttttagattcaggt
agctatgcaacaggattagtgcgagagttaatacgtttatcggaagagaataaagtttaa
DBGET
integrated database retrieval system
