Mannheimia varigena USDA-ARS-USMARC-1388: X875_4540
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Entry
X875_4540 CDS
T03029
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03420
Nucleotide excision repair
mve03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X875_4540
03430 Mismatch repair
X875_4540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mve03400
]
X875_4540
Enzymes [BR:
mve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X875_4540
DNA repair and recombination proteins [BR:
mve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
X875_4540
MMR (mismatch excision repair)
Other MMR factors
X875_4540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AHG79074
LinkDB
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Position
465019..467223
Genome browser
AA seq
734 aa
AA seq
DB search
MIMDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIAWLISVENIPESNIL
AVTFTNKAAAEMRHRIEHTLSQSGDNRLFGMWVGTFHSIANRLLRSHYLDADLPQDFQIM
DTEDQQRLLKRLLKLHNIDEKHFPPKHVAWYINAQKDKGKRAKDIDHHNDPNEKKLVEIY
QIYQDACDRAGLLDFAELLIRAYELFSQKPAILQRYQQRFQQILIDEFQDTNNIQYDLIR
LLAGDVGKVMIVGDDDQSIYGWRGAQVENIQRFLKDYNNAQTIRLEQNYRSTGNILSCAN
ELIANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEARFVASQIKQWKEDEGDLAECAVLY
RSNSQSRVIEEALIQANIPYRIYGGMRFFERQEIKDALAYLRLIANRQDDAAFERVINTP
TRGIGDRTLDTLRQITRNRQITLWQAIQVAVQEEQLSGRAASSLLRFVELINALDQETEQ
MSLAEQTDYVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFVKPDEAEDLTDLTAF
LTHASLEAGEAQASQHEDYVELMTLHSAKGLEFPRVFMVGVEEGLFPSGMSFDEGRLQEE
RRLAYVGITRAKKKLTISYAESRRLYGKEERHVPSRFIAELPEEHIREVRLRGSINRAAS
FNQSSSFAKNPQKTTASILNDDSWKMGQKVNHTKFGQGTIINVEGSGEATRLQVAFVGNG
IKWLIAKMANLEKI
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
gtgattatggatttctcattattattagatggtttaaatgacaagcagcgagaggctgtt
gctgcaccaatcggcaattacttggttctggcaggagccggttcaggcaaaacgcgagtt
ttaacccaccgcattgcgtggttaattagcgtggaaaatataccggaatcaaacattctc
gccgttacctttaccaataaagccgcagcagaaatgcgacatcgtattgagcatactctt
tctcaatcaggcgataaccgcctgtttggtatgtgggtaggcactttccatagtattgct
aatcgtttattacgctcccattacttagatgctgacttaccgcaagatttccaaattatg
gataccgaagatcagcagcgtttgctcaaacgcttgctgaaactgcacaatattgacgaa
aaacatttcccaccaaaacacgtggcgtggtacatcaacgcccaaaaagacaaaggcaag
cgagcgaaagatattgatcaccataacgatccgaacgaaaaaaaattagtggagatctac
caaatttaccaagatgcctgcgaccgcgcaggattgcttgatttcgctgagttgctgatt
cgtgcctatgaattattcagccaaaaaccggcaattttgcaacgttatcaacaacgtttt
cagcagattttgatcgatgagttccaagacaccaacaacattcagtacgatcttattcgc
ttattagcaggcgatgtgggtaaagtaatgatcgtgggtgatgatgaccaatcgatctac
ggttggcgtggggctcaggtagaaaatattcagcgtttcttaaaagattataataatgct
caaactattcgtttggaacaaaattatcgttcaacaggcaacattttaagctgtgccaat
gagttaattgccaacaacgacaaccgattaggcaaaaatttatggacagacagcggcgat
ggcgagcctgtggatatttactgtgctttcaatgagttagatgaagctcgctttgttgcc
tcacaaatcaaacagtggaaggaagacgagggcgatcttgctgaatgtgcggtgctttat
cgtagcaatagccaatcccgtgtgattgaagaagccttaattcaagcaaacattccatac
cgtatttatggtggtatgcgattctttgaacgccaagagatcaaagacgcgttggcgtat
ctgcgtttgattgccaaccgccaggacgatgctgcatttgagcgtgtgattaacacccca
accagaggtattggcgacagaaccttagacacgcttcgccaaattactcgaaaccgccaa
attaccttatggcaagccattcaagtggcagtgcaggaagaacaactttcaggcagagcg
gcttcttcgttgctccgctttgttgaattgattaatgccttagatcaagaaaccgagcag
atgtctttagctgagcaaaccgattatgtaattaaaaaatcgggcttgtatgaaatgtac
aaacaagaaaaaggcgagaaaggtgaagttcgtattgaaaacttagaagagctagtaact
gccactaaacagtttgttaaacctgatgaagcagaagatttaactgatctcactgccttt
ttaactcacgcatcccttgaagctggtgaagcacaagcctctcaacacgaagattatgta
gaactgatgacgcttcattcagcgaaaggcttagaattccctcgtgtctttatggtgggt
gtggaagaagggcttttcccaagcggaatgagctttgatgaaggaaggctacaagaagag
cgtcgcttggcatacgttggcattactcgtgcgaagaagaaactcaccattagctatgcg
gaatctcgccgtttatacggcaaagaagagcgccatgttccttctcgctttattgcagag
ctacccgaagagcatatccgtgaggtgcgtttaagaggctcaatcaaccgtgcggcgagc
tttaatcaatcttcctcatttgcaaaaaatccgcaaaaaacgaccgcttctattttgaat
gatgatagttggaaaatgggacaaaaagtcaatcatactaaatttgggcaaggtacgatt
atcaatgtggaaggttcaggcgaagcaacccgtttacaagtggcttttgtcggtaatggc
attaaatggttgattgcgaaaatggcgaatttagagaagatttaa
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