Mannheimia varigena USDA-ARS-USMARC-1388: X875_5830
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Entry
X875_5830 CDS
T03029
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03030
DNA replication
mve03430
Mismatch repair
mve03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X875_5830
03430 Mismatch repair
X875_5830
03440 Homologous recombination
X875_5830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mve03032
]
X875_5830
03400 DNA repair and recombination proteins [BR:
mve03400
]
X875_5830
Enzymes [BR:
mve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
X875_5830
DNA replication proteins [BR:
mve03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
X875_5830
DNA repair and recombination proteins [BR:
mve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
X875_5830
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
MJ0607
Motif
Other DBs
NCBI-ProteinID:
AHG79201
LinkDB
All DBs
Position
607969..611397
Genome browser
AA seq
1142 aa
AA seq
DB search
MINGLAKVKSLVKAAVANNMVAMGLTDFTNFCGLVKFYGEALGSGIKPIIGADVYVKSDT
GGDDYFELTLLAKNNIGYHNITQILSKAYQQGYIEFPMVEREWLAELNEGIIVLSGGRMG
DVGKALLKENLSEASEKLAFYQQYYPNHFYMSVCRTGRADEERYIKQAVEFSQKNAIPLV
AVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADLPSAL
ANTVEIAKRCSVTVRLGEYFLPNFPTGELSTEDFLVKKSREGLEERLEFLFPDPEERVNK
RAVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKIT
DLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIITFGTMA
AKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLEKAFAAEPKLPELYEADEEVKDLIDM
ARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFL
GLRTLTIIKWALEMINERLARESKEPIRIETIPLDDKKSFDLLLAAKTTAVFQLESRGMK
DLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPEYQHECLQPIL
EPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKGAESKGID
GKLAGAIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKI
VGFYDECINMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGVGEGPIEAILEARNKDG
RFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEE
LGQSDMFGVLTETPEEVQNAYANTPKWSEQTILDGERATLGLYLSGHPIGRFLKELSHYS
PNRLNELQPTFRGQMATVSGMVMASRVAVTKRGSRIGIATIEDRSGKLDITLFSEALENF
GHLMQQDQIIVASGSIQFDDFSGGLKMSAREVLSLDEARSRFAKSLALAISQEQLSATFI
KKMTAIITPYKEGTLPLHFYYQSPEGRVLLKGGVEWRVTPNEQMFSELKALLGENSVELE
FE
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgattaacggtttagccaaagtgaaatcgttagtcaaagcagctgttgccaataatatg
gtggcaatgggcttaaccgactttacaaacttctgtggcttggtgaaattttatggcgaa
gcactgggctcaggtattaaaccgattatcggtgctgacgtgtatgtcaaatcggataca
ggtggtgatgattattttgagctaacgctattagctaaaaacaatataggataccacaat
attacccaaattctctccaaagcctatcaacaaggctacattgaatttccaatggtagag
agagaatggctggctgagctgaatgaaggcattattgtgctttcaggtgggagaatgggc
gatgtgggtaaagctttacttaaagaaaatctatcggaagcttctgagaaactcgctttt
tatcaacaatattatccaaatcatttttatatgtcggtttgccgtacagggcgagcagac
gaagaacgctacattaaacaagcggtcgaattttcccaaaaaaatgcaattccactggta
gccgttaatgatgttgtcttcttaaaagaagatgactttgatgctcacgaaatccgggtg
gcaattcacgatagctatactttagatgatccaaaacgcccgaaaaagtattcgccgaag
caatatttccggacagaagaggaaatgtgcaagctgtttgcagacttgccgagtgcctta
gctaatacggtggaaattgcgaaacgctgctcagtgacggtgcgtttgggcgaatatttc
ctaccaaatttcccgacaggtgagctttcaaccgaagattttttagtaaaaaaatctcga
gaaggtttagaagaacgccttgagtttttatttcctgatcctgaagaaagagttaacaag
cgggcagtttatgacgaaagattgcaagttgaattagatgttatcaaccaaatgggcttc
ccaggttatttcttgatcgtgatggagtttattcagtggtcgaaagataacgatattccg
gttggtccggggcgtggctcgggagcgggctcgttggttgcttatgcattaaaaattacc
gaccttgatccgctggaatttgacttgcttttcgagcgtttcttaaatcctgaacgggtt
tcaatgcccgattttgatgtggacttctgtatggacggccgagatcgcgtgatcgaacac
gtggcggaaacttacggtcgccaagcggtatcacaaattattaccttcggaacgatggcg
gcaaaagcagtaattcgagatgtagggcgagtgttggggcatccgtatagctttgtggac
agaatttccaagctgattccgcccgatccgggaatgacactagaaaaagcttttgccgct
gagccaaaactccctgagctgtacgaggctgatgaagaagtcaaagatctaatcgatatg
gctcgcaagcttgagggcgtaacccgaaatgccggtaagcacgcagggggagtggtgatt
gccccaacagcaattaccgatttctcaccactctattgcgatagcgaaggtttgcacccg
gttacccatttcgataaaaacgatgtggaatatgcaggcttggtgaaattcgacttctta
ggcttgcgtacgctcaccatcattaaatgggcgttggagatgatcaacgagcgtttagcc
cgtgaaagcaaagaaccaattcggattgaaactattccgcttgatgacaaaaaatccttc
gacttattgctagcagcgaaaaccacagcggtgttccagcttgaaagccgaggaatgaaa
gatttgatttcccgcctcaagcctgactgttttgaggatattatcgctcttgtagccttg
ttccgaccaggtccgctggagtcgggaatggtgcagaactttatcgaccgtaaacacggc
aaagaagaggtttcttaccctgatcctgaatatcagcacgagtgcctacagccgattttg
gagccgacttacggcgtaattgtttaccaagaacaagtaatgcaaattgctcaagagctg
gcaggctataccctcggtggagcggacttacttcgccgtgcgatgggtaagaaaaagccg
gaagagatggcagctcaacgtgaagtttttgaaaaaggggcagaatcgaaagggattgat
ggtaaattagccggggcaatttttgatttagtagaaaaattcgccggctatggcttcaac
aaatctcactccgcagcctacgctttagtttcctaccaaacgctttggttaaaagcccac
tacccggctgaatttatggcggcggtaatgacttctgagatggacaataccgacaaaatc
gtgggcttctatgatgagtgtatcaatatggggctcaccgttgtaccgcctgatgtgaac
agcggaaaacaccgtttcagcgtgaatgaaaaaggcgaaattgtctatggtttgggggca
attaaaggcgtgggcgaaggcccgattgaagcaattttagaggcacgtaacaaagacggg
cgttttaaagatctgtttgatctgactgctcgggttgatctgaaaaaaatcaaccgccga
acctttgaaagcctgattatgtcaggagcgttcgacaaattaggcccgcaccgtgctgcc
ttgatgaaaaatctcgaagatgcgttgaaagcttcagatcaacatagcaaaatggaagaa
cttgggcagagcgatatgtttggcgtgctgaccgaaacccctgaagaagtgcaaaatgcc
tatgccaatacgccaaaatggtcggaacaaactattttagacggcgaacgtgcaacatta
gggctatatttaagcggtcacccaatcggtagatttttgaaagagctgtcgcactattcg
ccaaatcgcttaaatgagttacaaccaactttccgtgggcaaatggcgactgtttctggt
atggtaatggcatctcgagtagcggttaccaagcgtggcagccgtattgggattgcaact
attgaagaccgttcgggtaaactcgatattacgcttttctctgaggcattagagaatttc
gggcatttaatgcagcaagatcagattattgttgccagcggctcgattcaatttgatgat
ttcagcggcggcttgaaaatgtcggcaagagaggtgctttcccttgatgaagcgagatcc
cgatttgcaaaaagtttggcattggcaattagccaagaacagctatctgcaacttttatc
aaaaaaatgaccgctatcatcaccccttataaggaaggaacactaccgctacacttctac
tatcaaagcccggaagggcgtgtattgctaaaaggcggcgtagaatggagggtaacgcca
aacgagcaaatgttctctgagctcaaagcgttgttgggggaaaattcggtggagttagag
tttgagtag
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integrated database retrieval system
