Mannheimia varigena USDA-ARS-USMARC-1388: X875_9040
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Entry
X875_9040 CDS
T03029
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X875_9040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mve03019
]
X875_9040
Enzymes [BR:
mve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X875_9040
Messenger RNA biogenesis [BR:
mve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X875_9040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
DKCLD
Motif
Other DBs
NCBI-ProteinID:
AHG79522
LinkDB
All DBs
Position
937378..938619
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AA seq
413 aa
AA seq
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MSNHLTEHRFIDFPIHVNILNALDSKGFEFCTPIQAKTFPITLYGNDIAGQAQTGTGKTL
AFLVATFNHLLNNEVETAKNQPRALILAPTRELAVQIGADAQLFLQHSDLKLALAYGGDG
YDKQLQEIEKGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLM
RKCPKPQDRLTLLFSATLSPKVRELAYEDMDNAEYIEIEPLQRTGHRIKEELFYPSNEDK
MALLLTLLEEEWPDRCMIFANTKHKCEEIWQYLLADGHRVGMLTGDIAQKKRLSLLDNFT
KGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSISFACER
YAVNLPAIEEYIGHQIPVSQYDKESLLDVPKVNRPRGKNPFVAKKNNRNGVNK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcatcttactgaacatcgtttcattgatttcccgattcatgtcaatattctt
aatgcgttggacagcaagggctttgaattttgcactccaattcaagccaaaactttcccc
attacgctttatggaaatgatattgcagggcaagcccaaacaggaacggggaaaacgcta
gcatttttggtggcgactttcaaccatttactgaataacgaagttgaaacagcgaaaaat
cagccaagagcattaattttagccccaactcgtgaattggcggtgcaaatcggggctgat
gctcagctctttttacagcattctgatctgaaactcgcccttgcctacggcggtgatggc
tacgataaacagctacaagaaatcgaaaaaggcgtggatattttagtcggcacaacaggt
cgggtgattgattatgtgaaacaaggcattatcaatttggataaagttcaagtggtagtg
cttgatgaggcggatcgaatgttcgatcttggcttcattaaggatattcgttacttaatg
cgtaaatgtccgaagccgcaagatcgcttaacgctactgttttccgccaccctttcgcca
aaagtgcgtgagctggcttacgaagatatggacaatgccgaatatatcgaaattgagccg
ttgcaacgcactggccatcgtattaaagaggagcttttctacccgtctaatgaagataaa
atggcgttattgctgacgttgttggaagaagagtggccggatcgctgtatgattttcgct
aacactaaacataaatgcgaggaaatttggcaatatttgttagcggacgggcatcgggtc
ggaatgctgactggtgatattgcgcagaaaaaacgcctttcattgctggataatttcacc
aaaggcaatttggatattttagtcgttacggatgtcgcagctcgtggtttgcatattcct
gatgtcacgcatgtcttcaattatgatctgcctgatgataaagaagattacgtccatcgt
attggtagaacggggcgagcaggggagagcgggcattcaatcagctttgcttgtgagcgt
tacgcggtaaatttaccagctattgaagagtatatcggacaccaaattccggttagccaa
tatgataaagaatctttacttgatgtgccgaaagtaaatcgtccaagaggtaaaaatcct
tttgtggcgaagaaaaataatcgtaatggtgttaataaatag
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