Mannheimia varigena USDA-ARS-USMARC-1388: X875_9270
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Entry
X875_9270 CDS
T03029
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mve03032
]
X875_9270
03400 DNA repair and recombination proteins [BR:
mve03400
]
X875_9270
Enzymes [BR:
mve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
X875_9270
DNA replication proteins [BR:
mve03032
]
Prokaryotic type
DNA Topoisomerases
X875_9270
DNA repair and recombination proteins [BR:
mve03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
X875_9270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AHG79545
LinkDB
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Position
966710..969094
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AA seq
794 aa
AA seq
DB search
MLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIVTIHSDNSVSV
QDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQ
LTIRREGHVHEQFYSLGEPDAPLAVIGDTQKTGTSVRFWPSLDIFKNKTEFEYKILSKRL
RELSFLNSGVSIKLIDERDGKEEHFKYEGGIKAYVEYLNEGKTHIHNTPFYLSTEKDGIG
VEISLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANID
ASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVESSMNEALADYLAENPDDAK
NIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAG
GSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNIEKLR
YHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDN
DEMSQYEIDIALEGAGLYVSEDAPALSGVALENLILQYNSVQKLIERLNRRYPTLLLNEL
IYSKPLSVEFAKNEANVTAWSEAFVAKLMEKEVSGSFYRASVEFNTERQIYEPEIVVTTH
GMDTTYRIDYNFISSNEYARIVALGNELNDLLTDSAYVVRGERRQEISSFAEALDWLVKE
SRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRR
DFIETNALYAQIDV
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
gtgttacgaggcttagatgcggtacgtaaacgcccggggatgtacatcggtgacaccgat
gacggcacgggtttgcaccatatggtatttgaggtggtggataatgcgattgacgaagca
ttagccggacattgtaaagacattattgttaccattcattcggataactcggtttccgtg
caagatgacggacgtggaattccggtcggcattcaccctgaagagggcgtttctgcggct
gaagtaattatgaccgttcttcacgccggcggtaaatttgacgataactcttataaagta
tcgggcggtttgcacggtgtgggtgtgtcggtggtaaacgcactttcttccaaattacaa
ctgaccattcgccgagaaggccacgtgcacgagcagttctacagccttggcgagccagac
gcgccattagcggtgattggcgacacgcaaaaaacaggaacctctgttcgcttctggcca
agtttagacatcttcaaaaacaaaaccgaatttgaatacaaaatcctttcaaaacgcttg
cgtgagttgtcattcttaaactccggtgtgtcgatcaaattaattgacgagcgtgacggc
aaagaagagcatttcaaatacgagggcggtattaaagcctatgtggaatatttaaacgaa
ggcaaaactcatattcataacacgccattctatctttcaaccgagaaagacggcattggc
gtggaaatttcattgcaatggaacgacagctacaacgaaaacgtgtactgcttcaccaac
aatattccgcaacgtgatggtggcacgcatttggctggtttccgtggggcattaacccgt
gccttgaaaaactatatggacaacagcggtgttttgaaaaaagccgatgccaacattgat
gcctcaggcgatgatgctcgtgaaggtttagttgctgtgatttcggtgaaagtgccggat
ccaaaattctcatcacaaactaaagataaactggtttcttctgaagtgcgtggggcagtg
gaaagctcaatgaacgaagccttagcggactacttggcggaaaacccggacgatgcaaaa
aatatcgtcactaaaattatcgatgccgctcgtgcgagagaagctgctcgtaaagctcgt
gaaatgacacgccgcaaaggtgcgttagatttaggcggcttgccgggcaaattggcggat
tgtcaggaaaaagatccagcattatctgagctttacttagtggagggtgactctgcgggt
ggctcggcgaagcaagggcgtgaccgtaaaaaccaagcgattttgccgttaaaagggaaa
atcttgaacgtagagaaagcgcgtttcgacaaaatgctctcttcgcaagaagtggcaacg
ctcatcaccgcacttggcacgggcattgggcgtgatgattacaatattgaaaaattgcgt
tatcacaaaatcattattatgacggatgcggacgtggatggtgctcacattcgtacactg
ttattgactttcttctatcgccaaatgccggagttgatcgaaaacggttacatttatatc
gctcagccaccgctttataaagtgaaaaaaggtaagcaagagcgttatattcaagataac
gatgaaatgtcgcaatatgaaatcgacattgcgttagaaggggcaggattatacgtcagc
gaagatgcacctgcgttgagcggcgtagcgttagagaacctgattttgcaatacaacagc
gtgcaaaaattgattgaacgtttaaatcgccgttacccaacgttattgttgaatgaattg
atttactccaaaccgctttcggtggaatttgcaaaaaatgaagcaaatgtcaccgcttgg
agcgaggcatttgtagcgaaattaatggaaaaagaagtgagtggcagtttctaccgtgca
agcgttgaatttaacaccgaacgtcaaatttacgagccggaaattgtggtaactacgcac
ggaatggacaccacttaccgcatcgattataactttattagcagcaatgaatacgctcgc
attgtggcacttggcaacgagttgaacgacttactcacggattctgcctacgttgtgcgt
ggtgaacgccgtcaagaaatcagcagctttgccgaggccttggattggttggtgaaagag
tctcgcaaaggcttaaccattcaacgttataaaggattaggcgagatgaacccggaacaa
ttatgggaaaccacgatggatccggtcgctcgcaaaatgttgcaagtaaacatcaccgat
gctatcgctgccgacaaacttttcagcaccctaatgggcgatgaagttgaaccacgccgc
gattttatcgagactaatgcgttatatgcccagattgatgtgtag
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