Mannheimia varigena USDA-ARS-USMARC-1388: X875_9670
Help
Entry
X875_9670 CDS
T03029
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03410
Base excision repair
mve03430
Mismatch repair
mve03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
X875_9670
03430 Mismatch repair
X875_9670
03440 Homologous recombination
X875_9670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mve03400
]
X875_9670
DNA repair and recombination proteins [BR:
mve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
X875_9670
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
X875_9670
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X875_9670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
AHG79585
LinkDB
All DBs
Position
1018482..1020248
Genome browser
AA seq
588 aa
AA seq
DB search
MHKKTACYFISKKTIVEKLIKKRPLLTSAYLSDNMLLNRIYQSRGITSTKELEHILQNLY
RPQQLVNIEQAVDLLINAFEKQSRIVIVGDFDADGATSTSLAIIALKQLGFEKVDYLIPD
RFSQGYGLSIAVAEMALWKGVDLVLTVDNGVSSLEGVELLKQHGIKVLITDHHLPPETLP
NADAIINPNLPFCTFPSKSLAGVGVIFYVMMALRAKMRERNYFANKAEPNFAELLDLVAL
GTVADVVPLDRNNRILVYQGLQRIRSGHCRAGIKALAEVGKRELSTLQAVDLGFSIAPRL
NAAGRLENMSLGVELLICENMETARQLAFELDSLNQTRKEFEQEMKTEALAICAKLPSLT
QSGQAHGIVLYQPDWHQGVIGILASRIKDQFNRPVIVFAQESEDSEYLKGSARSISGVHM
RDLLEHIDMQYPELIEKFGGHAMAAGLTIHQSKLELFKQLLDQTINEIVEPEQLQGVIYT
DGELSIQEFNLANAELIRNSGPWGQNFPEPCFEGEFTLLQQKLVAGKHLKLMLQSDSGQL
LDAIWFNIDLRYFPDLSAKKARMVYKLDINEFRGNKALQLKVEYLNYL
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
ttgcataaaaagaccgcttgctattttatttcaaagaagactattgtggaaaaactaata
aaaaaacgccctttacttacctcagcgtacttatcagataatatgctacttaaccgtatt
taccaaagtcgaggaataacttcaactaaggaattggaacatattctacaaaatttatat
agaccacaacaactggttaacattgaacaagcagttgatttattaatcaacgcatttgaa
aaacagagccgtattgtgattgtaggggattttgacgccgatggtgcaacgagtacctcg
cttgcaatcattgcgctaaagcagttagggttcgaaaaggtggattatttaattccagac
cgtttttctcaaggctatgggttaagtatagctgtggctgaaatggcattgtggaaggga
gtagatttagttttaaccgtagataatggtgtatcttcgcttgaaggtgttgagttactt
aagcaacacggtattaaagttttgattaccgatcaccatttaccacctgaaacattaccc
aatgcggatgcaataataaatcctaatttaccattttgtacttttccgtctaaatcatta
gcgggtgttggcgtaatattttatgtgatgatggcattgagggcaaaaatgcgggaaaga
aattattttgcgaataaagctgaaccgaattttgctgaattgcttgatctagtggcttta
ggaactgtagctgatgtggttccccttgatagaaataatcgtattttagtttatcaggga
ttacaacgaatacgttctggccattgtcgagcaggcataaaagcattggctgaagtaggg
aagcgggaactatcaactctgcaagcggttgatttaggtttttctattgcgccaagactt
aatgccgcaggacgattagaaaatatgtctttaggtgttgagttactcatttgtgaaaat
atggagactgctcgccagcttgcatttgaattggattcactaaatcaaacacgtaaagag
tttgagcaagagatgaaaactgaagcattagctatctgcgcaaagttaccttctctcacc
caatcagggcaagctcatgggattgtactttatcagccagattggcaccaaggagtaatt
ggtattttagcatctcgaattaaagatcaatttaatcgccctgttattgtctttgcacaa
gaaagtgaagacagtgaatacttaaaaggctcagcacgttcaattagtggtgtgcatatg
agggatctactagagcatattgatatgcagtatcctgaattgatagaaaaatttgggggg
catgcaatggcggctggtttgactattcatcaatcaaagctagaattatttaaacaacta
cttgatcagacaattaatgaaatagttgaaccagagcaattacagggtgttatttataca
gatggtgaacttagtatccaagagtttaatttagcaaatgctgaattaatcaggaatagt
ggaccttggggacaaaattttcctgaaccttgttttgagggggaattcacgctattacaa
caaaaattagtagcagggaagcatttgaaattgatgttacaatctgatagtggacagctg
ctagacgctatttggtttaatattgatttaagatattttcctgatctttctgctaagaaa
gcgaggatggtatataagttagatattaatgagtttagaggaaataaagcgttacaatta
aaagtggaatacctgaattatctttaa
DBGET
integrated database retrieval system
