Malassezia vespertilionis: 80901239
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Entry
80901239 CDS
T11699
Symbol
YSH1, MVES1_001732
Name
(RefSeq) endoribonuclease ysh1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mves Malassezia vespertilionis
Pathway
mves03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mves00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
80901239 (YSH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mves03021
]
80901239 (YSH1)
03019 Messenger RNA biogenesis [BR:
mves03019
]
80901239 (YSH1)
Transcription machinery [BR:
mves03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
80901239 (YSH1)
Messenger RNA biogenesis [BR:
mves03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
80901239 (YSH1)
U7-dependent histone pre-mRNA processing factors
80901239 (YSH1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
RMMBL
Lactamase_B
DUF6047
Motif
Other DBs
NCBI-GeneID:
80901239
NCBI-ProteinID:
XP_056062548
LinkDB
All DBs
Position
3:complement(<484749..>487165)
Genome browser
AA seq
725 aa
AA seq
DB search
MAGEDAAVASPMMEDKLRIEMLALTYIMEKTNFKEGRGKVYMTHPTKAIYRFLMSDFVRI
SNAGSDRMLFDEAEMLASWRQIEAVDYHQEVIIGGALRFTPYHAGHVLGACMFMLEIAGI
RVLYTGDYSREEDRHLVQAEVPPVRPDVLICESTYGTQSLEPRLDKEMRFTSLIHTIINR
GGRVLLPVFVLGRAQELLLLLDEYWEAHPELHSIPIYYASSLARKCISIYQTYIHTMNHH
IRARFNRRDNPFVFKHVSNLRSLDKFEDKGPCVMMASPGFMQNGISRELLERWAPDKRNG
VIVNGYSVEGTMARDILSDPEEIMGLSGQRIPRRMSVDYISFSAHVDYTQNSRFIDEVKA
KHIVLVHGEVKNMSGLRAALQSRYNDRDDDVKIYMPRNCDPLFLAFRADRTAKVIGHLAD
KPPLTDKPIDGLLVAKDFSYTVLAPQDLGEFTGLGTNTILQRQRVALRVGWELVRWHLEG
MYGSIQDGVDLEGVRTLRIMNVVDIKQPHAHELLLEWVASISNDMVADSAIALLLSIDSS
PAAVKVTMQNHVCAHQHEPDVHLTQQEALTALLEAHFGHVQMAEVGGHAQEEAAMESGET
QIQGADAPPDEIPADAPVTDNEPTTPPLAQLLATIPGPLRAAMTIELDGEPAMIELTNMH
VYALSESLRQRVERLVAMVRSTYQSLSDAFYLVPTNTTMLFQGPHSQVQPPTESTAPRKA
LEACP
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgaagatgcagcggtggcatcgcccatgatggaggacaagctccgcattgag
atgctagcactcacctacattatggaaaaaaccaacttcaaggaagggcgcggaaaggtg
tacatgacgcaccccaccaaggcgatctatcgattcctcatgtctgactttgtgcggatc
agcaatgctggctccgaccgcatgctctttgacgaagcggaaatgctggcgtcgtggcgc
caaattgaggccgtcgactaccaccaggaagtcattattggcggcgcactgcgcttcacg
ccctaccacgcaggccatgtgcttggtgcatgcatgttcatgcttgaaattgccgggatc
cgtgtcctgtacacgggcgactatagccgtgaagaagaccggcaccttgtccaggccgaa
gtcccccctgtgcgccccgacgtgctcatctgcgaaagtacgtacgggacacagagtctg
gagccgcggttagacaaggagatgcgctttacctcgctcatccacaccattatcaaccgc
ggcgggcgtgttttgctgcccgtattcgtgcttggccgtgcccaagaactcctgctcctt
ttggacgagtactgggaagcgcacccggagctgcactcgatacctatctactatgcctct
agtttggcccgcaagtgtatttccatttaccagacctacattcacaccatgaaccaccac
atccgcgcgcgcttcaaccggcgcgacaacccatttgtgttcaagcatgtgagcaacctg
cgcagtttggacaagtttgaagacaaaggaccttgtgtaatgatggccagtccaggcttt
atgcagaacggcatcagccgcgagcttctggagcgatgggcgccggacaagcgcaacggg
gtaattgtgaatgggtactctgtcgaaggtaccatggcgcgcgacattctgagcgatcct
gaggagattatgggcctcagtggccagcgtattccccggcgcatgtctgtcgactacatt
tccttctctgcgcacgtcgactatacgcaaaactcgcgtttcatcgacgaagtcaaggcc
aagcatatcgtcctcgtgcacggcgaagtgaagaatatgagcggactacgcgctgcgctg
caaagcaggtacaatgaccgcgacgacgacgtgaagatatacatgccgcgcaactgcgat
ccgctcttccttgcgttccgcgcggatcgtaccgcgaaagtgattgggcatctcgcggat
aagccaccacttacagacaagccgattgacggcctgctggttgcgaaggatttctcgtat
accgtgctagcgccccaggatttgggcgagtttacagggttgggcacaaacaccatcctt
cagcggcagcgcgtggcgctgcgtgtaggatgggagctcgtgcggtggcacttggagggc
atgtatggctcaattcaagacggcgtagatttagagggcgtgcggactttgcggatcatg
aatgtggtcgatatcaagcagccgcacgcgcacgaactgttgttggaatgggtcgcgagt
atttccaacgatatggtcgctgattccgccattgccctgctgctaagcatcgatagtagc
ccagcagccgtcaaggtaacgatgcagaaccatgtatgcgcacaccagcacgagccagat
gtgcacttgacgcagcaagaagcgctcacggcgctcttggaggcgcatttcggccatgtc
caaatggcagaagtcgggggacatgcgcaggaggaagcagcgatggagagcggggagaca
cagatccaaggcgccgatgctccccccgatgagatccctgccgatgcccctgtcacagac
aatgagcccactacgccgcccctggcccagctcctcgcgaccattccaggaccccttcgc
gcggcaatgaccatcgagctggacggcgagcctgcgatgattgagctgaccaacatgcac
gtctacgcgctctccgagtcgcttcggcagcgcgtggagcgcctcgttgcaatggtacgc
tccacgtaccaatccttatcggacgcattctacctcgtgcccacgaatacgaccatgctc
ttccaaggcccacacagccaagtgcagccacctacagagtctacagcgccacggaaagcc
cttgaggcatgtccatag
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