Mannheimia varigena USDA-ARS-USMARC-1312: X874_1160
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Entry
X874_1160 CDS
T03028
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Pathway
mvg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X874_1160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvg03021
]
X874_1160
03400 DNA repair and recombination proteins [BR:
mvg03400
]
X874_1160
Enzymes [BR:
mvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X874_1160
Transcription machinery [BR:
mvg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X874_1160
DNA repair and recombination proteins [BR:
mvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X874_1160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
FG-GAP_3
Motif
Other DBs
NCBI-ProteinID:
AHG76754
LinkDB
All DBs
Position
122319..123296
Genome browser
AA seq
325 aa
AA seq
DB search
MTEFLKPHLVNIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTDVEIDGV
LHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTLNKSGIGPVTAADITHDGDVEIV
NPDHVICHLTDKNASINMRIRVQRGRGYVPASARLHTQNDDRPIGRLLVDARFSPVDRIA
YNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIRRAATILAEQLAAFVDLRDVRQPEVKE
EKPEFDPILLRPVDDLELTVRSANCLKAETIHYIGDLVQRTEVELLKTPNLGKKSLTEIK
DVLASRGLSLGMRLENWPPASIAED
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaatttttaaagccgcacttagtgaacattgaacaaattagttcaactcacgct
aaagtgacattagagccgttagaacgtggttttggccatacattaggcaatgcacttcgt
cgcattttactttcatctatgccgggttgtgcagttactgacgttgaaattgatggtgta
ttacatgaatacagcagtaaggaaggcgttcaggaagatattcttgaggtattattaaac
cttaaaggtctagcggtaaaagtgcaaaataaagatgatattattttgacactaaataaa
tctggaattggccctgtaactgcagctgacatcacacacgatggcgatgtagaaatcgta
aatccagatcacgttatttgtcacttaacagataagaacgcatcaattaatatgcgtatt
cgtgttcaacgtggtcgtggttatgtgcctgcatcagcacgtcttcatactcaaaacgat
gatcgtccaatcggtcggttattagttgatgcacgtttctcaccagtagaccgcattgct
tacaatgtcgaagctgctcgtgttgaacaacgtacagacttagataaacttgttattgag
atggagactaatggtacattagatccagaagaggctatccgtcgtgctgcaacgatttta
gcagagcaacttgctgcattcgttgatttgcgtgatgttcgtcaacctgaagtgaaagaa
gaaaaaccggagtttgatcctattcttcttcgcccagtagatgacttagagctgacagtt
cgttctgctaactgtttaaaagcagagacaattcactatatcggtgatttagtacaacgt
acggaagtagaacttctcaaaacccctaacttgggtaaaaaatctcttacagagatcaaa
gatgttcttgcttctcgtggcttatcactcggtatgcgccttgaaaactggcctcctgca
agcattgcagaagactag
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