Mannheimia varigena USDA-ARS-USMARC-1312: X874_12920
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Entry
X874_12920 CDS
T03028
Name
(GenBank) Exodeoxyribonuclease V
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Pathway
mvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
X874_12920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvg03400
]
X874_12920
Enzymes [BR:
mvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
X874_12920
DNA repair and recombination proteins [BR:
mvg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
X874_12920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
DEAD
AAA_30
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AHG77927
LinkDB
All DBs
Position
complement(1397276..1400800)
Genome browser
AA seq
1174 aa
AA seq
DB search
MNNLNTITLPLNKSVLIEASAGTGKTFTIANIYLRLLLGVGCLPLTVEQILVVTFTKAAT
EELKNRIRKNIQQCADFLKDKVNGEGIEGKSYANNLEFLEQFYPHINHIHEALLRLSIAE
REIDTASVFTIHSFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEDVWREQFYPQGVK
ESEIISAELTTPERALNAVRNYLASELPEPKAFLAQDFTEQLAQYNRFIDEVKSYWKANS
AELVEAIRHDLKNKTTLHGGWYRSATFETGVIVMNQWVNSSNRDLPDEFYLFTAEKIASG
TKKSCEPMDLPQLAKNQDFLTAYQQQFENSLKAILLYQFLISLKTKLAEYKQSHPERGFD
DLLTMLNQALKNPQTGKALAQKIRSIYPFAMIDEFQDTDLTQYEIFSQIFMVEQSDNGFI
MIGDPKQSIYKFRGADIFTYLRAAKQAEEQFTLGKNWRSLPEVVQAVNNLFYFANKEKSP
FLYDDIGFYPVEADGRKGKLISEQGHFVCYTSDKTKLNDVAEICAYQIHQQLKAMNEGKF
GIEKNGEFNPFKPKDITILVRKGSQAKRIKKALAKRNIKSVYLAESASVFGSEIAIELCW
ILQAGLNPYNYKALLSALGSTLWGLSAAEIYRYKENEMLWDLKVNQFVEYSTIWKEQGIL
PMLHKIYLEQGIIERLKGLPNADRLITDLLHLTEILQETSQALESEAELVRWYEKQISSP
DFNDEQQLRLESEEELIKIVTIHGSKGLQYPIVWLPFATEKSEGDTKVHLGLYRNTQGKL
DWYLGEKEAKEQIQNETYAEDLRLFYVALTRAESQLNLVLPKMISGWSPLHYLLAEGELP
KDNVSVADYFEKKQISADIIEVAGHLPFSRWESGKTEESYQAKTFSGNIRVVGQITSFTS
LYAQHERFSEGKAERVIDLAQDRDVHMELIEPDYTMETDAFSSFQFPHGIKVGTVLHSFF
EHCRFGEQIDKESVAKVCEQLGLSEEWIEPTLGWFERIFATPLPEANFCLKEIDETKRLN
EWQFYLRLKNDKALHQLNALLKQHSPLAKNLPELQLPQLEGFVRGFVDCIVQMNGKFYLI
DYKSNFLGYLPQNYSAENIQREMGRQRYDLQYLLYTLAVHRYLKARLGDNYDYERDFGGV
AYLFLRAMNGEDTSGVYLDKPCKKLIEEMDLLFG
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaataatctaaataccatcacattacctttaaacaaatcagtcttaattgaagcctct
gcaggcacggggaagacatttaccattgccaatatttacctgcgtttattgctcggtgtc
ggctgcttgccacttactgttgaacaaattctggtggttacatttaccaaagcggcaacg
gaagagttgaaaaatcgtatccgaaaaaatattcagcaatgtgccgattttttaaaagat
aaagtgaacggagaaggcatcgaaggaaaatcttacgctaataatcttgagtttttagag
cagttctatccgcatatcaatcacattcacgaagcattattacgtttgagcattgctgag
cgtgaaattgacactgccagcgtgtttaccattcacagcttctgccaaaaaatgttagtg
cagtttgccttcgaatcaggcgtgcgatttgatcttgatttacagccgaaccaatctgat
ttactgaaaaaattaagcgaagatgtatggcgagagcagttttatccgcaaggggtaaaa
gaaagtgaaattatttcagctgaattaactacaccggaaagggcgttaaatgcggtaaga
aattatttagcaagtgagttgcccgagccgaaagcgtttctagctcaagattttacggaa
cagttggcacaatataatcgatttattgatgaagtgaaatcttactggaaagcaaatagt
gcggagttagttgaggcaattaggcacgatctcaaaaataaaacgacgttacatggtggt
tggtatcgctctgctacttttgaaacgggtgttattgtgatgaaccaatgggtaaattcg
tcaaatcgtgatttgccagacgagttctatctgtttactgcggagaaaatagcctcaggc
acgaagaaaagttgtgagccaatggatttacctcaacttgcaaaaaatcaggattttttg
accgcttatcagcagcaatttgaaaatagcttaaaagcgattttactctatcaattttta
ataagcttaaaaaccaagctggcagaatataagcaatcgcacccggagcgtggttttgat
gatttactcacaatgcttaatcaagcattgaaaaatccgcaaacaggtaaggcgttagct
caaaaaattcgttctatttacccttttgcgatgatcgatgagttccaagataccgatctc
actcaatatgaaattttcagccaaatttttatggtagagcagagcgataacggctttatt
atgattggcgatccgaaacagtcgatttacaaatttcgtggggcggatattttcacttat
ttgcgagcagcaaagcaggctgaagagcagtttacgcttggcaaaaactggcgttctttg
cctgaagtagtacaagcggtcaataatttgttttattttgcaaataaggagaaatccccg
tttctttatgatgatattggtttttaccctgttgaggcagacggtcgcaaaggtaagcta
attagtgagcaagggcattttgtgtgctacaccagcgataaaaccaagctcaatgacgtc
gcagaaatttgtgcataccaaattcatcaacaacttaaggcaatgaatgaggggaaattc
gggattgagaaaaatggcgagttcaacccttttaagccaaaggatattaccattctagtg
cgaaaaggctcacaagcaaaacgcattaaaaaagccctagccaagcgaaatattaaatcc
gtttatttagcggaatcggcttctgtatttggttctgaaattgcaattgaactttgttgg
attttgcaagccgggcttaatccttacaattataaagcgttattatccgctttaggttca
accctttgggggctaagtgcggcagaaatttatcgctacaaagaaaatgaaatgttgtgg
gatttaaaggtcaatcagtttgtggaatacagcactatttggaaagagcaaggcattttg
ccgatgttgcataaaatctatttggagcaaggtattattgaacgattaaaaggcttgcca
aatgcggatcgtttaattactgatttactgcatttgacggaaattctgcaagaaacttcg
caggcgttggaatctgaagcggaactggtgcgttggtatgaaaagcaaattagctcaccc
gattttaatgatgaacagcaacttcgccttgaaagtgaagaagagttgattaaaattgtt
accattcacggctcgaaaggattgcaatatccgatagtttggttgccgtttgcaacagaa
aaaagcgagggcgatactaaggtccatttaggtttataccgtaatacacaaggtaaattg
gattggtatttgggtgaaaaagaggcaaaagagcaaatccaaaatgaaacctatgcggaa
gatctccgtctgttttatgtggcattaacccgtgcggaatctcagctcaatttagtgtta
cctaaaatgatttcaggctggagcccgttacattatttattggcagaaggtgaattaccg
aaagataacgtgagtgttgcagactattttgagaaaaagcagatttcagccgatattatt
gaagtagcagggcatttaccttttagccgttgggaaagtggtaaaacggaggaaagttat
caagccaaaacctttagtggcaatattcgggtagtggggcagattacgagttttacttca
ctttatgcacaacacgagcgttttagtgaaggtaaagcagaaagagtgatagatttagcc
caagacagagatgtccatatggaactcattgagccggattacacgatggaaactgatgct
ttttcatcattccaatttccgcacggcattaaagttggtactgtgttgcacagttttttt
gagcattgccgatttggtgaacaaattgataaagaaagtgtggcgaaagtgtgcgaacaa
ttaggtttaagtgaagaatggatcgagccaacattaggttggtttgagcgtatttttgct
actcctctgccggaagcaaatttctgtttaaaagagatcgatgaaactaaacggttaaat
gaatggcaattctatttacgtttaaaaaatgataaagctctgcaccaattaaatgcgtta
ttaaaacaacatagccctttagcaaaaaatttgcctgaactgcaattaccgcaattagaa
ggctttgtgcgtggttttgtggattgtattgtgcagatgaatggcaaattctatttgatt
gactataaatcgaatttcttaggttatctgccacagaattattctgcagaaaatattcag
cgagagatgggcagacagcgttatgatttacaatatttgctttatacccttgccgtgcat
cgctatttaaaggctcgtttgggcgataattatgattacgaacgtgattttggcggtgtg
gcgtatcttttcttacgggctatgaatggggaggacacaagcggtgtttatttggataaa
ccttgcaaaaaattgattgaagaaatggacttgttgtttggctaa
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integrated database retrieval system
