Mannheimia varigena USDA-ARS-USMARC-1312: X874_17090
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Entry
X874_17090 CDS
T03028
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mvg03016
]
X874_17090
Enzymes [BR:
mvg01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
X874_17090
Transfer RNA biogenesis [BR:
mvg03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
X874_17090
Prokaryotic type
X874_17090
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruD
Csm1_N
Cas6_I-A
Motif
Other DBs
NCBI-ProteinID:
AHG78343
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Position
1835536..1836555
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AA seq
339 aa
AA seq
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MQLNYLYSAPQTVGRLKAEFADFIVREELGYELSGEGEFVAVKIRKTNANTLFVGEKLAK
FAGISKRDMGYAGLKDRHAITEQWFCLHLAGKETPDFSTFECEGVEILEVTRHNRKIRVG
ALEGNHFELLLRDVVESEDLNYRLQQLQAVGFPNYFTEQRFGRDGHNLTQAQRWAKGEIV
VKDRKKRSFYLSAARSEVFNLVVSQRISDGLMNQVLENDYVQLAGSNSFFCVTENEIAES
QDRLDRADLLLTAPLIGEKSLETTANSAEKTIIEQHKELVELMKKERMSTARRAMICKPK
GLEWQFETDGLRLKFFLDSGSYATGLVRELIRLSEENEV
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaactatttatactccgcccctcaaactgttgggcgtttaaaagccgaattt
gccgattttatcgtgcgtgaagaattaggatacgaactttctggtgaaggcgaatttgta
gcggtgaaaatccgcaaaactaacgctaacacgctttttgtcggcgaaaaattagcgaaa
tttgccggtatttccaaacgggatatgggctacgcaggcttgaaagatcgccacgctatc
accgagcaatggttctgcttgcatttagcaggcaaagaaacacccgatttctctactttt
gaatgtgaaggcgtggaaattttagaggttactcgccacaatcgcaaaatccgtgtcggg
gcgttggagggcaaccatttcgagctgttattgcgtgatgtggtggaaagtgaagatctc
aactatcgcctgcaacagctacaagcggtcggatttcccaattattttaccgaacaacgt
ttcgggcgagatgggcacaacctcacccaagctcaacgctgggcaaaaggcgaaattgtg
gttaaagatcgcaaaaaacgcagtttttatctctccgccgctcgctccgaagtgtttaat
ttagtggtttcccaacgtattagtgatggcttgatgaatcaagtattagagaatgattat
gttcaactggctggctcaaacagctttttctgcgtgaccgaaaatgaaatcgctgaaagc
caagatcgcctagatcgagccgatctattattaaccgctccgctgatcggcgaaaaatcc
ctcgaaaccaccgccaattccgccgaaaaaactattatcgaacagcacaaagagctagtc
gagctaatgaaaaaagagcgaatgagcactgcccgccgggcaatgatctgcaaacctaaa
ggtctcgaatggcaatttgagacagatggattaagattaaaattctttttagattcaggt
agctatgcaacaggattagtgcgagagttaatacgtttatcggaagagaatgaagtttaa
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