Mannheimia varigena USDA-ARS-USMARC-1312: X874_17820
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Entry
X874_17820 CDS
T03028
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Pathway
mvg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
X874_17820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvg03400
]
X874_17820
Enzymes [BR:
mvg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
X874_17820
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
X874_17820
DNA repair and recombination proteins [BR:
mvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
X874_17820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
zf_C2H2_13
Zn_ribbon_8
DZR
HscB_4_cys
RNHCP
Motif
Other DBs
NCBI-ProteinID:
AHG78416
LinkDB
All DBs
Position
1902343..1903167
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AA seq
274 aa
AA seq
DB search
MPELPEVETSVRGIEPYLKGQTIKQIIIRQPKLRWAVSDELSAMQNATIFAVERRAKYLI
IRTDKGDILVHLGMSGSLGILPESQQKEIGKHDHVDLITQNGTVLRYNDPRKFGCWLWAE
KAEDHELLRKLGPEPLSDAFTPDYLFAKSRKKTTACKTFIMTNEVVVGVGNIYACESLFI
AGIHPELASQNLTKKQCERLVKTIKEVLTKAIIQGGTTLKDFIQPDGKPGYFAQVLQVYG
RKGEACNDCGKPIETKVIGQRNTYFCPKCQKLPK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagttgaaaccagcgtgcgaggcatcgagccgtatttaaaaggg
caaaccattaaacaaattattatccgccaacccaaactacgctgggcagtgagcgatgag
ctttccgcaatgcaaaatgccaccatttttgcggtggaaagacgggcgaaatatctgatc
atccgaaccgataaaggtgatattttggtgcatttaggaatgtccggctcgctcggtatt
ttgccagaaagccaacaaaaagaaattggcaagcacgaccacgtcgatcttattacccaa
aacggcactgttttacgctataacgatcctcggaaatttggctgttggctatgggctgaa
aaagccgaagatcacgaactcctccgcaaactcggacctgaaccgctttcagacgctttc
acacccgattacttatttgcaaaaagtcgtaaaaaaacgaccgcttgtaaaacctttatt
atgacaaatgaagtggttgtcggcgttgggaatatctatgcgtgcgaaagtttatttata
gcaggtattcaccctgagcttgcatcacaaaacctaactaaaaagcaatgcgaacgttta
gtgaaaaccatcaaagaagtgctaactaaagcgattattcaaggcggcacaacgctcaaa
gattttattcaacctgacggcaaacccggctattttgctcaagtgctacaagtatatggg
cgaaaaggagaagcttgtaatgattgcggaaaaccgattgaaaccaaagtgattgggcaa
cgtaacacttacttctgcccgaaatgtcagaaattgcctaaataa
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