Mannheimia varigena USDA-ARS-USMARC-1312: X874_7660
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Entry
X874_7660 CDS
T03028
Name
(GenBank) RNA polymerase-associated protein rapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvg03021
]
X874_7660
Transcription machinery [BR:
mvg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
X874_7660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHG77402
LinkDB
All DBs
Position
800741..803653
Genome browser
AA seq
970 aa
AA seq
DB search
MFVVGQRWLSESENNLGLGMVMAVDHRTVTINFPAAEEERVYAISVAPLTRVQFQAGDRI
SSVEGWHLDVTDVVENQGVAIYLGKRADNGEDAVLPEMLLDHKISFSKPQDRLFSAQIDR
SDRFALRFKALQHQQAQYQSPLRGLRGIRASLIPHQLHIAKEVGQRLAPRVLLADEVGLG
KTIEAGMILQQQLFSGRVERVLVLVPESLQHQWLVEMLRRFNLKFSLFDEERCADFDKED
ENGDDASENPFESESLVITSLNWLETAPARAKQVLEAEWDLLIVDEAHHLEWSESEPSIG
YQFVESLAKQIPSVLLLTATPEQLGQESHFARLALLDADRFYSYDEFVAEQSQYQPVADA
VATLLSDKPLTNDEQNAIAELLSEQDTEPMFRAINSKKSDENDRLQARQELISELIDRHG
TSRVLFRNTRQGVKGFPHREYHQISLEMPKQYANALKVMSMMGGLNQGDLLYPERLFQRM
NPNAKWAEFDPRIEWLITFLKNHRDEKVLVICKQADTAIALEQILREREGIRSAVFHEKM
SIVERDKAAAYFAQQEDGAQVLISSSIGSEGRNFQFAKDLVLFNLPDNPDLLEQSIGRLD
RIGQKNNIQIYVPCFNHSAQQMLAEWYHKGLNAFEETCPMGTAIFRELGEELQHFVQNPE
LSEQFGDFLAKTHKRQQQLKAELEKGRDRLLEINSNGGEAVQDLANAIAKEDNNPHLVNF
ALNLFDVIGVEQEDLGEESIVISPTGHMLVPDFPGLSEDGTTITFNRELALMREELEFLT
WDHPMIRNGIDLITSGDIGKSAISLLINKALPAGTLLLEAIYVVETQAPKSLNLTRFLPP
TPIRILVDNKGNNIAPQVPFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVLPK
VQQIIETAKFEANSKLKAELHRLEALKMVNKNIRTDEVEALEQQLNASLAQIELANYRLD
SLRVIVSNKE
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtagttggtcagcgttggctaagtgaatcggaaaataatttaggtttaggtatg
gttatggcggtggatcatcgcaccgtcaccatcaatttcccggcagcggaggaagagcga
gtgtatgcgatttccgttgctccattaactcgagtgcagtttcaagcaggcgatagaatt
agtagtgtagaaggctggcatcttgatgtgacggacgtggtggaaaatcaaggtgttgcg
atctatttaggaaagcgtgccgacaacggcgaagacgccgtgttgcctgaaatgctgctc
gatcacaaaatcagttttagcaaaccgcaagatagacttttctccgcccaaattgaccgc
agcgatcgtttcgccttgcgttttaaggcgttgcagcaccaacaggctcaatatcaatcg
ccattacgaggcttgcgtggcattcgggcgagcctgattccgcaccaattacatatcgcc
aaagaggtggggcaacgccttgcccctcgtgtgttgctggcggatgaagtgggcttagga
aaaaccattgaagctggaatgattttgcagcagcaactgttttcgggcagggtggagcgt
gtgctcgtgctcgtgccggaaagtctgcaacatcaatggctggtggaaatgctccgccgt
tttaatctcaaattttcgctgtttgatgaagagcgttgtgccgattttgataaagaggac
gaaaacggcgatgatgcaagcgaaaatccgtttgagagcgagtctttggtgattacctca
ctcaactggctggaaaccgctccggctagagcaaaacaggtgctagaggcagagtgggat
ttgttgattgttgatgaagctcaccatttggagtggtcggagagcgaaccctctatcggc
tatcaatttgtggaaagtttggcgaagcaaattccgtccgtactacttttaactgcaaca
ccagagcagctggggcaagagagccatttcgcccgtttagcgttgttagatgcagaccgt
ttttatagctacgatgaatttgtggcggagcagtcgcaatatcagccggtggcagatgcg
gttgctacgctcttgagtgataaaccactgaccaatgatgaacaaaatgcgattgcggag
ctgttgagcgagcaagataccgagccgatgttccgtgcgattaatagcaaaaaatcggac
gaaaatgaccgcttgcaagcgcgccaagagttgattagtgagctgattgaccgccacggt
accagccgagtgcttttccgcaatactcgccaaggggtgaaaggtttcccacaccgtgaa
tatcaccaaatcagcttggaaatgccgaagcaatatgcgaatgcgttaaaagtgatgtcg
atgatgggcggcttgaatcagggcgatttgctctatccggagcgtttattccagcgaatg
aacccaaatgcgaaatgggcggagtttgaccctcgcattgagtggctgataactttcttg
aaaaatcatcgtgatgaaaaagtgctggtgatttgcaagcaagcagataccgccattgcg
ttagagcagattttgcgtgagcgtgagggcattcgctctgccgtgttccacgaaaaaatg
tcgattgtcgagcgagacaaagcggcggcttattttgctcaacaggaagatggggctcag
gtgctgattagttcaagcattggttcggaaggacgaaatttccaattcgccaaagatttg
gtgctgtttaatttgccggataatcctgatttgttggaacagagcatcgggcgtttagac
cgtatcgggcagaaaaacaatattcaaatttatgtgccgtgcttcaaccattccgctcaa
caaatgctggcggagtggtatcacaaaggcttaaatgcctttgaagaaacctgcccgatg
gggacggcgattttccgtgaattgggcgaagaattacaacatttcgtgcaaaatcctgaa
ctttccgagcaattcggcgactttttagcgaaaacccataaacgtcaacagcagttaaaa
gcggagttggaaaaaggtcgagatcgtttattggagatcaactccaacggtggcgaggca
gttcaagatctggcgaatgcgattgcgaaggaagataacaatccacacctcgtgaatttt
gccctaaatctgtttgacgtgattggcgtggagcaggaagatttgggcgaagagagcatt
gtgattagcccaaccgggcatatgcttgtgccggatttcccggggctgtcggaagatggt
acaaccattacctttaaccgtgaattagccttaatgcgtgaagagctcgaattcctgact
tgggatcacccgatgatccgaaacggtattgatttaatcacttctggcgatatcggcaaa
tcagctatttcgctgctgattaataaagccttgcctgcaggaacgctattgttagaagcg
atttatgtggtagaaacccaagccccgaaaagtttgaatttaacccgcttcttaccgcca
acaccaattcgtattttggtggataacaaaggcaacaacatcgctccacaagtaccattc
gcagggctggaacgccagctcaagccagtgaataaacagatggcaaacaaaattgcgaaa
atggcacgggcggacattgaaaagctaattaaagcgagcgaaaaagcggtattgcctaag
gttcaacaaatcattgaaaccgcaaaatttgaggcaaatagcaaattaaaggcagaatta
caccgcttggaagctctgaaaatggtgaataaaaatatccgaaccgatgaagttgaagcc
cttgagcagcaactaaacgcaagcctcgcccaaattgagctggcgaactatcgtttggat
agtttgagggtgattgtgagtaataaagagtaa
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