Mannheimia varigena USDA-ARS-USMARC-1312: X874_7980
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Entry
X874_7980 CDS
T03028
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvg03019
]
X874_7980
Enzymes [BR:
mvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
X874_7980
Messenger RNA biogenesis [BR:
mvg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
X874_7980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
ResIII
SLFN-g3_helicase
DNA_ligase_A_N
NACHT
AAA_23
SRP54
AAA_30
ABC_tran
DUF327
PhoH
AAA_24
AAA_25
RsgA_GTPase
TsaE
Motif
Other DBs
NCBI-ProteinID:
AHG77434
LinkDB
All DBs
Position
complement(840434..844342)
Genome browser
AA seq
1302 aa
AA seq
DB search
MMKKNLRKNEQNQPLVKLENITTSDFRRLLGRLKGAENIKNEANKRSVLDEILQDLTACQ
ARFFIRQTHAQNLKIDYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLEL
GRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKVRFNDKVSENSLVKLMTDGI
LLAEIQHDQYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERF
SKHFNNAPIIEVSGRTFPVEVRYRPIVEEEDQDQLQGILNAVDELQAEGRGDILIFMNGE
REIRDTADALQKQDLRFTEILPLYARLSAEEQQRIFKPSGLNRIILATNVAETSLTIPNI
KYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSR
PPFTDPEILRTNLASVILQMASLELSDIANFPFVDSPDVRQVQDGIRLLEELQAFHHRKT
KHGEVRELTTIGKQLAQLPIDPRLGRMVIEAAKNGSLHEVMMIVSALSIQDPRERPQEKQ
QSADDKHRRFADKDSDFLAFVNLWKFIQEQQKELTKNQFRKLCQKDYLNYLRVREWQDIY
HQLRLSVREMGLPINSLDANYQQIHTALLTGLLSHIGLKDNEKMHYLGARNAQFFIFPNS
MLFKKQPKWIIASELVETTKLWARTVAKIEPEWIEPLAQHLVKSSHSEPHWSKSKGAVMA
YEKVSLYGLPIVMSRPINYGSIDPETCREIFIRSAMVEGDWHNNYKFFQENNRLIKEVED
LEHKSRRRDILVDEQVLFDFYDQRVGTEVVSSKHFDTWWKQASKKEPELLNFEKSFLINE
DANKVSELDFPNFWHQGQLKFKLSYQFEIGQDHDGVTVHIPLPLLNQVEPEGFDWQIPGL
RHELVVSLIKSLPKATRRNFVPAPNYADAFLAKAEPLAKPLLESLTYELRRMTGVTVESE
LWDLSQLPAHLRMTFRVIDEKGKKIAESENLDDLKFALKDQVQTTLSNIADDGIEQSGVH
VWSFAELPQFYEQKKQHFSVKAYPAIVDEKESVGIKLFETEFEQARAMQAGLRRLLLLNV
PSPIKYLHEKLPNKAKLGLYFAPFGKVMDLIDDCIACAVDKLVEEFGGFVWNEEKFQALH
EFVRANLNDTTAGIALQVEKCLTLAFEINKRMKGKMDFTMAFAMSDIKAQIEGLIYPEFV
TKTGHHRLADLYRYLSAIDKRLDKLGTDTNTDRAKMLRVEQVQNAYKQLLAKLPKSKAIP
DNILEIRYMIEELRVSLFAQQLGTKYPTSDKRILNTIIALKK
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
gtgatgaaaaagaatttgcgaaaaaatgaacaaaatcaaccgcttgtaaaactggaaaat
atcacaacgagcgattttcgtcgcctacttggcagattaaaaggagcagaaaatattaaa
aatgaagctaacaagcggtcagttttagacgaaattttgcaagatctaaccgcttgccaa
gctcgcttttttatccgccaaacccacgcccaaaatctaaaaattgactatccggatctg
cctgtttcagctcgccgtgaggaaattttaaagctgattgctgaaaatcaagtagtcgta
attgctggtgaaaccggttcgggtaaaactacccaattgccgaaaatgtgtttggaactc
ggacgaggcgtaaaaggattaatcggacatactcaaccccgcagaattgcggctcgatct
gtggcaacccgtattgctgaagaactgaaatcggagctgggcgagacggtcggttacaaa
gtccgctttaacgataaagtcagtgaaaacagcttagtcaaactgatgacagacggtatt
ttactggctgaaattcagcacgaccaatatcttaatcaatatgatacgttaattatcgac
gaagcccacgaacgttcgctgaacaacgatttcatcttgggctatttaaaacaaattctg
cataaacgccctgatctgaaagtaatcattacctccgctaccattgatgtggaacgtttt
tccaaacatttcaacaatgctccaattattgaggtgtcggggcgaactttcccggttgag
gtgcgttaccgccctatcgttgaagaagaggatcaagaccagttacaaggcattctgaat
gccgttgatgaactgcaagccgaagggcgtggcgatattctgatttttatgaatggtgag
cgagaaattcgtgacaccgctgatgctttgcagaaacaagatctgcgttttaccgaaatt
ctgccgctctacgctcgtttatccgccgaagaacagcagcggattttcaaaccaagtggg
ctgaaccgtattattttagccaccaacgtggcggaaacctcactcacgatcccgaatatc
aaatatgtgatcgacaccggcacggctcgcatttctcgctacagctaccgcaccaaagtt
caacgcttgccgattgagccgatctcccaagcctccgctaatcagcgaaaagggcgttgc
ggacgtgtatcggaagggatttgtatccgcctctactcggaggaagatttcaacagccgt
ccgccatttaccgatccggaaattttgcgaaccaacctagcttcggtaattttgcaaatg
gcttcattggagctgagcgatattgccaacttcccatttgtggattcgcctgatgtacgc
caagtgcaagatggtattcgcctattggaagaactccaggcatttcatcacagaaaaacc
aaacacggcgaagtgcgtgagcttacgactatcggtaaacaactcgcccagctgcctatt
gacccacgtttaggaagaatggtgattgaagcagcgaaaaacggctcattgcacgaagtg
atgatgattgtgtctgctctctccattcaagatcctcgtgaacgtccgcaggaaaaacag
caatcggcggacgacaaacatcgtcgttttgcagacaaagattctgatttcttggcattc
gtgaatttgtggaaatttattcaagagcagcaaaaagagctcactaaaaatcagttccgc
aagctctgtcagaaagattatttgaactatctgcgggtgcgtgagtggcaggatatttat
catcaacttcgcctttctgtacgagaaatgggcttgccgatcaatagcttagatgcaaat
tatcagcaaattcataccgctttactcaccggtttgctctcgcatatcggcttgaaagat
aacgaaaaaatgcactatttgggggcaagaaacgctcagtttttcattttcccaaactcg
atgcttttcaaaaaacaaccgaaatggattatcgcctcagagttggtagaaaccaccaaa
ctttgggcgagaacggtggcgaaaatcgagcctgaatggattgagccgctcgctcaacat
ttggtgaaaagcagtcacagcgagccgcattggtctaaatcaaaaggggcggtgatggcg
tatgaaaaagtgtcgctgtacggcttgccgattgtgatgagccgtccgatcaactatggc
tcaatcgatccggaaacctgccgtgagatttttatccgctcggcaatggtggagggcgat
tggcacaataattacaaatttttccaagaaaataaccgcttgatcaaggaagtggaagac
ttggagcacaaatctcgccgccgtgatattttggtggacgagcaagtgctgtttgatttt
tacgatcaacgtgtcggtaccgaggtggtttccagcaaacatttcgacacttggtggaag
caagctagcaaaaaagagcctgaattgctcaattttgaaaaatcgtttttgattaacgaa
gatgccaacaaggtgagcgagctcgacttcccaaatttctggcatcaagggcagctcaag
ttcaaactgagctatcaatttgagatcgggcaagatcacgatggcgtgacggtgcatatt
ccgctgccgctgctcaaccaagttgagccggagggctttgactggcaaattccggggcta
cgtcacgagctcgtggtgtcactgattaaatcattaccaaaagccactcgccgcaatttt
gtgccagctccaaactatgccgatgcgttcctcgccaaagccgagccgttggcaaaaccg
ctgctggaaagtttaacttacgagcttagacgaatgacaggcgtaactgtagaatctgaa
ctttgggatttaagccaactgccagctcatttacgaatgactttccgtgtgattgatgaa
aaaggcaaaaaaatcgccgaaagcgaaaacctagacgatctgaaatttgcgttgaaagat
caggttcaaactaccctttccaacattgctgatgacggtattgaacaaagtggtgtgcat
gtttggagcttcgccgaactgccccaattctacgagcagaaaaagcagcatttcagcgta
aaagcctaccctgcgattgtggatgaaaaagagagtgtcggcatcaaattgtttgaaacc
gaatttgaacaggctcgtgcgatgcaagccggacttcgccgtttgttgctattaaatgtg
ccttcgccaatcaaatatttacacgaaaagctgccgaataaagcgaaattaggcttatat
ttcgccccatttggcaaggtgatggacttaattgatgactgcattgcgtgtgcggtggat
aaattagtggaagaatttggcggttttgtgtggaatgaggaaaaattccaagcgttacac
gaatttgtgcgggcaaacctcaatgacacaacggctggcattgcgttacaggttgaaaaa
tgtttaaccctcgcctttgaaatcaacaaacgaatgaaaggtaaaatggatttcacgatg
gcatttgcgatgtcggacatcaaagctcaaatcgaggggctgatctaccctgaatttgtc
accaaaaccggacatcaccgcttggcggatttgtatcgctacctcagtgcaattgacaaa
cgtttggacaaactcggtacagacaccaataccgaccgagccaaaatgttgcgtgtggaa
caggtgcaaaacgcttacaaacaactgctcgccaaattgccgaaatcgaaagcgatcccc
gataatattttggaaatccgctatatgatcgaggaactgcgagtcagtctgtttgctcaa
cagttagggacgaaatacccgacttcagataagaggattctaaacacaattattgctcta
aaaaaataa
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