Mannheimia varigena USDA-ARS-USMARC-1312: X874_8800
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Entry
X874_8800 CDS
T03028
Name
(GenBank) Cold-shock DEAD box protein-A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Pathway
mvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X874_8800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvg03019
]
X874_8800
03009 Ribosome biogenesis [BR:
mvg03009
]
X874_8800
Enzymes [BR:
mvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X874_8800
Messenger RNA biogenesis [BR:
mvg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X874_8800
Ribosome biogenesis [BR:
mvg03009
]
Prokaryotic type
rRNA helicases
X874_8800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
DRTGG
tRNA-synt_1b
Motif
Other DBs
NCBI-ProteinID:
AHG77516
LinkDB
All DBs
Position
complement(935225..937054)
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AA seq
609 aa
AA seq
DB search
MTTESLTFADLGLPQSILDAVTDMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLAQIDPAQRHPHMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLDLSELKCIVLDEADEMLRMGFIDDVETVMAELPED
HQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLEKLRSGRLDILV
ATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
ENLIKKPIVEVSIPNHEVLMEKRREKFKARISKQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMLLQEKQKLILPPDPVVRAARSERGRDRNDRNGDRNDRRNGREYRDNNGVAMDLY
RIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHLVQHFAQKA
RVLNKQMQMSLLGPVNGGNDQPFESRGRRGGERRNDRNERGGRRDGGFGKDRKGGFKEKR
FGEKRGRRD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgaatctttaactttcgccgacttaggtcttcctcaatcaatccttgatgcc
gtaaccgatatgggctttgtaaacccatcgcctattcaacaagagtgtattccgcattta
ttagccggtcgtgatgtgttaggtatggcacaaaccggtagcggaaaaacagcagctttc
tctttgccgttactcgctcaaatcgacccggctcaacgccacccgcacatgttggtaatg
gctccaacccgtgaattagccatccaagtggcagacgcttgcgaacaattcgccaaaaat
atgaaaggcattcgtgtggttactgtttacggtggtcagcgttacgacatccaacttcgt
gccttaaaacaaggctcgcaagtagttgtgggtacaccaggccgtattcttgaccacatt
cgtcgtggcactttagatttatccgagcttaaatgtatcgtattagacgaagctgatgaa
atgttgcgtatgggctttattgatgatgtggaaaccgtaatggcagaattgccggaagat
caccaaacggctctcttctctgcgacaatgccggagccgattcgccgcattacccgccgc
tttatgaaagatccgcaagaggtgaaaatcaaggcgactgaacgctctgccccagatatc
gagcaaagctactggttagtaaacggcttccgtaaaaatgacgcgttattacgtttctta
gaagtggaagagttcgatgcggctatcatctttacccgcaccaaaaccggcaccattgat
attaccgaattgtgcgaacgtaacggctaccgcacggcagccctcaacggcgatatgacc
caacaagctcgcgagcaaactttagaaaaattacgctcaggtcgtttagatattttagtg
gcaacagacgtagctgctcgtggtatcgacatcgaacgtatcagcctagtaattaactat
gacattccgcttgaagaagaatcttacgttcaccgtatcggtcgtaccggtcgtgccggt
cgttcaggtcgtgcattattattcgttgagcctcgtgaacgccgcttactgcgtaatatt
gaaaacctcatcaaaaaaccgattgttgaagtttcaattccaaaccatgaagtgttaatg
gaaaaacgccgtgagaaattcaaagctcgtatttctaaacagttagagcatcacgattta
gagaaataccgtgagttgttggaagatttattcactgcagatcaagatcacgaagagtta
gcggcagcaatgatgatgttattgcaagagaaacaaaaattgattcttccgccagatccg
gttgtgcgtgcggcacgttcagagcgtggtcgtgatcgcaatgacagaaacggtgacaga
aatgaccgtcgcaatggtcgtgagtatcgtgataacaacggtgtggcgatggatttatac
cgtatcgaacttggtcgtgaagatggtgtggaagtgcgtcatatcgtgggtgcaatcgct
aacgaaggcgacatcagcagccgctatatcgggcatatcaaattgcacgacacttactcc
actatcgaattaccacaaggtatgccgaaccacttagtacaacacttcgctcaaaaagcc
cgtgtgttgaacaagcagatgcaaatgtcgttattagggccggtaaatggcggaaacgac
caaccgtttgaatctcgtggtcgccgtggtggtgaacgccgtaatgacagaaacgagcgt
ggtggacgccgtgatggcggtttcggtaaagatcgcaaaggcggttttaaagaaaaacgc
tttggtgaaaaacgtggtcgccgtgactaa
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