Mannheimia varigena USDA-ARS-USMARC-1312: X874_9510
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Entry
X874_9510 CDS
T03028
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvg03032
]
X874_9510
03400 DNA repair and recombination proteins [BR:
mvg03400
]
X874_9510
Enzymes [BR:
mvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
X874_9510
DNA replication proteins [BR:
mvg03032
]
Prokaryotic type
DNA Topoisomerases
X874_9510
DNA repair and recombination proteins [BR:
mvg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
X874_9510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF7351
Zn_ribbon_recom
Zn_ribbon_IS1595
Toprim_4
CK_II_beta
Motif
Other DBs
NCBI-ProteinID:
AHG77587
LinkDB
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Position
1020571..1023177
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AA seq
868 aa
AA seq
DB search
MGKSLVIVESPAKAKKINQYLGSDYVVKSSVGHIRDLPKSGSDEKTEKAKPISTKGLSAT
EKAKVKAEKERTALVKRMGIDPYNGWKANYQIMPDKEKVVSELKSLAKKSDHIYLATDLD
REGEAIAWHLREIIGGDESRFSRVVFNEITKDAIKKAFEDPQPLNIDRVNSQQTRRFLDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFQSEEFWTILANTQINRKKL
PLELTLYKGKKFSAKNEKEASVAVQALEKSDFIVSNIEAKETSSRASAPFITSSLQRTAS
TRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSREALAMARGYIEDNFGANYLPEKANV
YRSKDNAQEAHEAIRPSDVNVKMADLKGMDKDAERLYDLIWRRFLACQMLPARYDSTSLT
VRAGDYELKANGRVMRFDGWTKVLPVQGKNPEDQELPAVELNQKLKLDEIVPSQHFTKPP
ARFNEASLVAELEERKIGRPSTYASIISTIQERGYVRTENKRFYVEKIGEVVTDRLNESF
KDLMNYDFTANMEEVLDQIAEGNKNWKDELNTFFKHFSEELTQAELDELEGGMKPNSIVP
TDIDCPTCGRKMAIRTASTGVFLGCTGYALPPKERCKTTMNLIPEAELLNVLDSDSEAKA
LMARKRCPKCDSAMDSYVIDAERKLHVCGNNPNCDGYIVEQGSFKIKGYDGPVVECDKCG
ADMRLKLGRFGKYMGCTNCDNTRKILKNGEVAPPKEDPITFPELKCEKADAYFVLRDGAS
GVFMSAHNFPKVRESRAPKVAELAKYRDRLPEKLQYLADAPQQDPEGNETIIRFSRKEKR
QYVTSEKNGKATKWIVDYVDGKWVERSK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaatcactcgttattgtggagtctccagctaaggcgaaaaaaattaatcaatat
ctcggtagcgactatgttgtgaaatccagtgtagggcatatccgtgatttaccgaaaagc
ggcagcgatgaaaaaacggaaaaagcaaagccgatttcaactaaaggtttaagtgcaaca
gaaaaggcaaaagtcaaagcagaaaaagagcgtacagcgttagtaaaacgtatggggatc
gatccttacaacggttggaaagcgaactatcaaattatgcctgataaagagaaagtggtt
tctgaattaaaatcactggcgaaaaaatctgaccatatctatcttgcaactgacttggat
agagaaggggaggcgattgcttggcatttacgtgagattatcggtggcgatgaaagtcgt
tttagtcgcgtagtctttaatgaaattactaaagatgcgattaaaaaggcgtttgaagat
ccacagccactaaatattgaccgtgttaattcccaacaaacacgccgctttttagaccga
gtggtaggctttatggtatcgccattactttggaaaaaagtcgctcgaggtttatctgct
gggcgtgtgcaatctgtcgcggtgaaattgctagttgagcgtgagcgtgaaattaaagcc
ttccaaagtgaagagttttggacaattttggccaatacgcaaattaatcgtaaaaaacta
ccgcttgaattaactttatataagggcaaaaaattctctgcgaagaatgaaaaagaagcg
agtgttgccgttcaagcattagaaaaaagtgattttattgtttctaacattgaagcaaaa
gaaaccagttctcgtgcttctgctccattcattacttcatcgttacaacgtactgcaagt
acacgtttaggctttggcgttaagaaaacaatgatgttggctcaacgtttatatgaagcg
ggctacattacttatatgcgtactgactccacaaacctaagtcgtgaggctttagcgatg
gctcgaggttatattgaagataacttcggggcaaattatttacctgagaaggcgaatgtg
tatcgtagtaaagataacgcacaagaagcccacgaagctattcgtccttctgatgtgaat
gtgaaaatggcagatttgaaagggatggataaagatgctgaacgtttatatgacctaatt
tggcgtcgtttccttgcttgccagatgttgcctgcacgctacgattcgacttcattaacc
gttcgagctggcgattatgaattaaaagcgaatggtcgtgtaatgcgttttgatggctgg
acgaaagtattaccggtacaaggtaaaaatcctgaagatcaagaattacctgcggtagag
cttaatcaaaaacttaaacttgatgagattgtgccaagccagcactttaccaaaccacct
gcacgttttaatgaggcctcattggtagcagagcttgaagaacgaaaaattggtcgtcct
tcaacttatgcttcaattatttcgaccattcaagagcgtggctatgttcgcactgaaaac
aaacgtttttatgtggaaaaaatcggtgaggtagttactgatcgtttaaatgaatctttt
aaagatttaatgaattacgactttactgccaatatggaagaagttttagaccaaattgca
gaaggtaataaaaactggaaagatgaattaaatacattctttaagcatttttctgaagag
ctaacccaagcggaattagatgagcttgaaggagggatgaagccaaacagcattgtgccg
acagatattgattgtccgacttgtggcagaaaaatggctatccgtaccgcttctacaggg
gttttcttaggttgtacaggctatgcgttaccaccaaaagagcgctgtaaaactacgatg
aatttaattccggaagcagagttgttaaatgtactggattctgattcagaagctaaagca
ttaatggctcgtaagcgttgcccgaaatgtgattctgcgatggatagttatgtaattgac
gcagaacgtaaattacacgtttgcggaaacaatccaaactgcgatggttatattgtggaa
caaggctcattcaaaattaaaggttatgatgggcctgttgtagaatgtgataaatgtggt
gcggatatgcgcctaaaattaggtcgttttggcaaatatatgggctgtacgaattgcgat
aacactcgcaaaattttgaaaaatggtgaggtggctccgccaaaagaagatccgattacc
ttccctgaactcaaatgcgaaaaagccgatgcttattttgtattgcgcgacggagcaagc
ggtgtctttatgtcggcacacaatttcccaaaagtgcgtgaaagccgagccccgaaagtg
gcagaattagctaaatatcgtgatcgcctgccggagaaattacaataccttgctgatgct
ccacaacaagatcctgaaggaaacgagacgattattcgctttagccgtaaagaaaaacgc
caatatgtaacctcagagaaaaacggtaaggcaactaaatggattgttgattacgttgat
ggtaagtgggtagagcgctcaaaataa
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