Mannheimia varigena USDA-ARS-USMARC-1296: X808_10940
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Entry
X808_10940 CDS
T03027
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X808_10940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvi03400
]
X808_10940
DNA repair and recombination proteins [BR:
mvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
X808_10940
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
X808_10940
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
UB2H
DUF5683
DUF87
EAD9
Motif
Other DBs
NCBI-ProteinID:
AHG75617
UniProt:
W0QBE1
LinkDB
All DBs
Position
complement(1162749..1164806)
Genome browser
AA seq
685 aa
AA seq
DB search
MLKFYKIYQDFFFMSKQHKPFILHSPFKPSGDQPTAIAKLTEGLNDGLAHQTLLGVTGSG
KTFTIANVIAQLNRPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPA
SDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVG
AMIGQREILTRLAELQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVELFDDEIENL
SLFDPLTGHSLGKVPRYTIYPKTHYVTPRERILEAIEQIKTELADRRTYFIKENKLLEEQ
RIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKEGEPPPTLLDYMPADGILVIDESHVTV
PQIGGMYRGDRARKETLVQYGFRLPSALDNRPLKFEEFERLSPQTIYVSATPGAYELEKN
PDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDY
LDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADK
EGFLRSERSLIQTIGRAARNLNGKAILYGDRITNSMQKAITETERRREKQMKYNEENGIV
PQALNKKVGELLDIGQSDKPKRGKQAVKKAENSANDYKPKSRKELEKELKVLEQQMRDFA
KDLEFEKAAAVRDKVQQLKAVLLEV
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtgttaaaattctataaaatttatcaggatttcttttttatgagtaaacagcacaaacct
tttattcttcactctccgttcaaaccttcaggcgatcagccgacggcgattgccaagcta
acggaaggcttaaatgacggcttggctcatcaaaccttgctcggtgtaacgggctcgggg
aaaaccttcacgatcgcaaatgtcattgctcaactcaatcgtcctgcgatggtacttgct
ccaaataaaacgcttgccgctcagctttatgccgaaatgaaagcctttttccctgaaaat
gcggtggagtatttcgtttcttactacgactactaccagcccgaagcctatgtgccggca
agtgatacttttattgagaaagatgcctctatcaacgagcagatcgagcaaatgcggctt
tccgccacaaaatctttcttagaacgccgagatactattgtagttgcctccgtttcggcg
atttacggcttgggtgatgttgatgcctatatgcagatgatgttgcatttgcaagtagga
gcaatgattgggcaacgtgaaattctcactcgccttgccgagttacaatacacacgcaac
gatcaggcattccagcgttcgaccttccgtgtgcggggcgatgtgattgatatttatcct
gctgagagcgatgaagtggcgttgcgggtcgagctgtttgatgacgaaatcgaaaacctg
tcgctgttcgacccactcacggggcatagcctcggcaaagtgcctcgttataccatctac
ccgaaaacccactatgtgacgccacgagagcggattttggaggctattgagcagatcaaa
accgagcttgccgatcgccgtacctatttcatcaaagagaataaattgctggaggagcag
cggattgcccaacgcactcaatttgatattgagatgatgaacgagctgggctactgctcg
ggtattgaaaactactcacgctatttatctggaagaaaagagggcgagccgccaccgacc
ctgctcgactatatgccggcggacggcattttggtgattgacgaaagccacgttactgtg
ccgcagattggtggaatgtatcggggcgaccgagcgagaaaagagacgctggtgcaatat
ggtttccgtttgccatctgctcttgacaaccgaccgttgaaatttgaagagtttgaacgc
ctttcgccacaaacgatctatgtgtcggcaacaccgggagcctatgaattagagaaaaat
cccgatgtggtcgatcaggtggttcgcccgactggcttgcttgacccgattatcgaagtt
cgcccagtcgccacacaagttgatgatttactgtcggaaattcataaacgagtggcggta
gacgagcgagtgctggtaactacgctgaccaaaaaaatggcggaagatctgactgactat
ttagacgaacacggcgttcgggtgcgttatttacacagcgacatcgacacggtagaacgg
gttgagatcatccacgatttacgaatgggaatgtttgatgtgttggtggggattaacttg
ctgcgtgaaggcttggatatgccggaagtctcgcttgtggcaattcttgatgcggataaa
gagggtttcctccgctccgaacgctcgctaatccaaactatcggacgagctgctcgaaac
ctcaacggcaaagcgattttatacggcgaccgtattactaactcaatgcagaaagcgatt
acggaaaccgaacgccgccgtgaaaaacagatgaaatacaatgaagaaaacggcattgtg
ccacaagcgttgaacaaaaaagtgggcgagttgctcgatatcggacaatccgacaaacca
aaacgaggcaaacaagcggtcaaaaaagccgaaaattctgcaaacgactacaaaccaaaa
tcccgcaaagagctggaaaaagaactgaaagtgctagaacaacaaatgcgagattttgcg
aaagatttagagtttgaaaaagcggctgcggtgagggacaaggtgcagcagttaaaggcg
gttttgttggaggtttag
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