Mannheimia varigena USDA-ARS-USMARC-1296: X808_11640
Help
Entry
X808_11640 CDS
T03027
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mvi03016
]
X808_11640
Enzymes [BR:
mvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
X808_11640
Transfer RNA biogenesis [BR:
mvi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
X808_11640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF2274
TRAM
Hemolysin_N
Motif
Other DBs
NCBI-ProteinID:
AHG75687
UniProt:
W0QBN6
LinkDB
All DBs
Position
1229988..1231964
Genome browser
AA seq
658 aa
AA seq
DB search
MFQNNPLLAQLKQQIEANKEYVEGKVKASDKSFGFLECDKENFFIPPTEMKKVMHGDTVK
AVVKREGDKASVEIDSLIEPMLERFIAQVRYNKEGKLQLAVDHPSIKQNLPANTHKKVTE
TLKNGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAPWWVTLARHEQPREPVANEKS
YELHDELEREDLTHLYFTTIDSPSTQDMDDALFVEPIEENGLQAGWRLVVAIADPTAYIP
ENSNIEKAARQRCFTNYLPGFNIPMLPRELSDDLCSLVPNEKRPALVGFIETDLEGNLTK
EANFTLAWVESKDRLAYDNVSDYLENVENAWQPQSAETKQQIDWLHQFTQARIQWRAKNA
LLFKEQGDYKFELNEDGSVKDIHVEYRRIANQMIEESMILANICCAKFLSENAKTGVFNT
HSGFDSKNYELVKSFLLQTLATDENREALAERYSAERLMTLDGYCEMQRDIQDFPERFLE
LRLRRYLTFAEFKTEVAPHFGLGISHYATWTSPIRKYGDMVNHRLIKQVLLGKQASAVEE
SVLTRLQEARRQNRLVERDIADWLYTHYLFPMVEQAVEFECEIADVSRGGLRAKVINNGA
QIFVPFSTLHDNKDEMDYRQEELALYIKGEKAYQIGQEVKVKLTEVRVETRSIVGNII
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaacaatccccttttagcccagctaaagcaacaaatcgaagcgaataaagag
tatgtggaaggcaaagtgaaagcctccgataaatcttttggctttttagaatgtgataaa
gagaacttttttattccacctacggaaatgaaaaaagtgatgcacggagacaccgtgaaa
gcggtggtaaaacgtgagggcgataaagcctcggtggaaatcgacagcttaattgagccg
atgctagaacgttttatcgcccaagtgcgttacaacaaagaaggcaaattgcaactggcg
gtagatcacccaagcattaagcaaaacctgcctgccaacacgcataaaaaagtgactgaa
accttaaaaaatggcgactgggttgtggctcaactgaaaacgcacccattgcgtgatgac
cgttttttcttcgctcaagtaactcaatttatctgtaaagagagcgacaatttcgctccg
tggtgggtaacactcgctcgccacgaacagcctcgtgagccagtggctaacgaaaaaagc
tacgaattgcacgatgaactagagcgtgaagatttaacccatctctacttcaccaccatc
gacagcccaagcacgcaagatatggacgatgccttgtttgttgagccaatcgaagaaaac
ggcttacaagccggctggcgtttagtggtggcgattgccgatccaaccgcttatattccg
gaaaattccaacatcgaaaaagccgctcgccaacgttgtttcaccaactatttgccggga
tttaacattccaatgttgcctcgtgaactgtcagacgacctctgctcgcttgtgccaaat
gaaaaacgcccagctctcgtgggctttattgaaactgacctagagggcaatttaaccaaa
gaggcgaatttcactttagcgtgggtggaatcaaaagatcgtttggcttacgacaacgtg
tctgactatcttgaaaacgtggaaaatgcgtggcagccgcaatcagcagaaaccaaacag
cagatcgactggctacaccaattcacccaggctcgtattcaatggcgagcaaaaaatgcg
ttgcttttcaaagagcaaggagattataaatttgagttaaacgaagatggctcggtgaaa
gatattcacgttgaataccgccgcattgctaaccaaatgattgaagagtcgatgatcctc
gctaatatttgttgtgcaaaattcttgtcggaaaatgccaaaaccggcgtattcaacacg
cactcaggttttgatagcaaaaattacgagttagtgaaatcgttcttactccaaacctta
gctaccgatgaaaaccgtgaagccttggcagaacgttattcggctgaacgcttgatgacc
ttagacggctactgcgaaatgcaacgtgatattcaagatttcccagaaagattcttggaa
ctccgccttcgccgttacttaactttcgctgaatttaaaacagaagttgccccacatttt
ggcttaggtattagccactatgcgacttggacatcgccaatccgtaaatatggcgatatg
gtaaaccaccgcttaatcaagcaagtgttgctaggcaaacaagcctcagctgtagaagaa
agcgtactcactcgcttgcaagaagcccgccgccaaaatcgcttggtggaacgtgatatt
gccgactggctctacacccactacctattcccaatggtggaacaagcggtcgaatttgag
tgcgaaattgcagatgtatctcgtggtggcttgcgtgcaaaagtgattaacaacggagct
caaattttcgtaccattctcaactttacacgacaacaaagacgaaatggactaccgccaa
gaagagctggctctttacatcaaaggcgaaaaggcctaccaaatcgggcaagaagtgaaa
gtgaagctcaccgaagttcgcgtagaaactcgctcgattgtgggcaatattatctaa
DBGET
integrated database retrieval system
