Mannheimia varigena USDA-ARS-USMARC-1296: X808_1200
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Entry
X808_1200 CDS
T03027
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X808_1200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvi03021
]
X808_1200
03400 DNA repair and recombination proteins [BR:
mvi03400
]
X808_1200
Enzymes [BR:
mvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X808_1200
Transcription machinery [BR:
mvi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X808_1200
DNA repair and recombination proteins [BR:
mvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X808_1200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
DUF6571
FG-GAP_3
Motif
Other DBs
NCBI-ProteinID:
AHG74647
UniProt:
W0Q8L6
LinkDB
All DBs
Position
123200..124177
Genome browser
AA seq
325 aa
AA seq
DB search
MTEFLKPHLVNIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTDVEIDGV
LHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTLNKSGIGPVTAADITHDGDVEIV
NPDHVICNLTDKNASINMRIRVQRGRGYVPASARLHTQNDDRPIGRLLVDARFSPVDRIA
YNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIRRAATILAEQLAAFVDLRDVRQPEVKE
EKPEFDPILLRPVDDLELTVRSANCLKAETIHYIGDLVQRTEVELLKTPNLGKKSLTEIK
DVLASRGLSLGMRLENWPPASIAED
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaatttttaaagccgcacttagtgaacattgaacaaattagttcaactcacgct
aaagtgacattagagccgttagaacgtggttttggccatacattaggcaatgcacttcgt
cgcattttactttcatctatgccgggttgtgcagttactgacgttgaaattgatggtgta
ttacatgaatacagcagtaaggaaggcgttcaggaagatattcttgaggtattattaaac
cttaaaggtctagcggtaaaagtgcaaaataaagatgatattattttgacactaaataaa
tctggaattggccctgtaactgcagctgacatcacacacgatggcgatgtagaaatcgta
aatccagatcacgttatttgtaacttaacagataagaacgcatcaattaatatgcgtatt
cgtgttcaacgtggtcgtggttatgtgcctgcatcagcacgtcttcatactcaaaacgat
gaccgtccaatcggtcggttattagttgatgcacgtttctcaccagtagaccgcattgct
tacaatgtcgaagctgctcgtgttgaacaacgtacagacttagataaacttgttattgag
atggagactaatggtacattagatccagaagaggctatccgtcgtgctgcaacgatttta
gcagagcaacttgctgcattcgttgatttgcgtgatgttcgtcaacctgaagtgaaagaa
gaaaaaccggagtttgatcctattcttcttcgcccagtagatgacttagagctgacagtt
cgttctgctaactgtttaaaagcagagacaattcactatatcggtgatttagtacaacgt
acggaagtagaacttctcaaaacccctaacttgggtaaaaaatctcttacagagatcaaa
gatgttcttgcttctcgtggtttatcactcggtatgcgccttgaaaactggcctcctgca
agcattgcagaagactag
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