Mannheimia varigena USDA-ARS-USMARC-1296: X808_12150
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Entry
X808_12150 CDS
T03027
Name
(GenBank) DNA polymerase I (POL I)
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03030
DNA replication
mvi03410
Base excision repair
mvi03420
Nucleotide excision repair
mvi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X808_12150
03410 Base excision repair
X808_12150
03420 Nucleotide excision repair
X808_12150
03440 Homologous recombination
X808_12150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvi03032
]
X808_12150
03400 DNA repair and recombination proteins [BR:
mvi03400
]
X808_12150
Enzymes [BR:
mvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
X808_12150
DNA replication proteins [BR:
mvi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X808_12150
DNA repair and recombination proteins [BR:
mvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
X808_12150
NER (nucleotide excision repair)
GGR (global genome repair) factors
X808_12150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AHG75738
UniProt:
W0QEW3
LinkDB
All DBs
Position
complement(1285663..1288521)
Genome browser
AA seq
952 aa
AA seq
DB search
MATIAQNPLVLVDGSSYLYRAFHAFPPLTNRNGEPTGAMYGVLNMLKSLISQVNPSHIAV
VFDAKGKTFRDQLFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLISIEGVEADDVIGT
LAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDFL
ALMGDSADNIPGVKGVGEKTALALLQGIGSLKQIYENLDQIATLSFRGAKNFAPKLEAEK
ENADLSYLLATIKTDVELEVTHDQLLTQPQNRAELATLFEHYEFKRWLNEVNNNANPVTQ
ASAEKVPNNYQATQAVKKVENLANIIQIDRSKYETVDSEPKFNEWLAKLQAAKLIAVDTE
TDSLEAMSANLVGISFGLENGEACYIPLGHKQKAQPKQADMFGGDDETESEAADELVKNQ
LNLTACLSQLKPILENAEIQKIGQNIKYDLTIFANHGIELQGVAFDTMIESYTLNSTGRH
NMDDLADRYLGHKTIPFEELAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWENL
AQEPELVKLFNEIEMPLVGVLSRIERNGVLIDPKKLLAQSAEIEQRLAEIEQAVHAEAGQ
VFNLASTKQLQEILFDKLGLPVLKKTPKGAPSTNEEVLDELAQQGHIVPKLLMEHRGLSK
LKSTYTDKLPQLINAKTGRVHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVA
REGYKIVAADYSQIELRIMAHLADDEGMITAFAQGKDIHRATAAEIFGVALEDVTSEQRR
SAKAINFGLIYGMSSFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAAEKGYV
ETLFGRRLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDNDDIKM
IMQVHDELVFEVKADKIEHYSQLIKAEMEKSISLKVPLIAEVGVGDNWDEAH
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaatcgcacaaaatccactggtgctggtggacggttcatcttacttatatcga
gcatttcacgcgttccctccgctaaccaatcgcaatggtgagccgacaggggcgatgtat
ggtgttttgaatatgttaaaaagcttgatttcacaagtaaacccaagccacattgcagta
gtgtttgatgcgaaaggcaaaacctttcgtgatcaattgttcgagcaatataaatctcac
cgcccgccaatgcctgatgagcttcgttcgcaaattcaaccgctgcacgccattatcaaa
gccctcggcattccgctgatttcgattgaaggggtagaagcggacgatgtgatcggcacc
cttgccgtgcaagctgccaaagatggcaaagacgtgttaatcagcacaggcgataaagat
atggcacaactggtgaacgatcacattatgttgataaatacgatgaataacactttgctt
gaccgtgaaggcgtcatcgaaaaatatggcattccgcccgagttgattatcgatttctta
gccctaatgggcgattccgccgataatattccgggcgtaaaaggtgtaggcgaaaaaaca
gcattagcgttattacaaggcattggttcacttaaacagatttatgaaaatttagaccaa
attgccacactttcgtttcgtggagcaaaaaactttgcgccgaagttagaagcagaaaaa
gaaaatgcggatttatcttatctattagccaccatcaaaaccgatgtcgagctagaggtt
actcacgatcagcttttgactcagccgcaaaatcgtgcggagcttgctacattatttgag
cactatgaatttaagcgttggttaaatgaagtaaataacaatgctaaccctgttacacaa
gcctctgctgaaaaagtgccgaataattaccaagctacacaagcggttaaaaaagtggaa
aatcttgcaaatatcatacagattgaccgtagcaaatatgaaaccgtggacagcgagccg
aaattcaacgaatggctagcgaaattgcaagccgcaaaattgattgcggtggacaccgaa
actgacagccttgaggcgatgtcggcaaatttggtaggcatttcattcggtttggaaaac
ggtgaagcgtgctatattcctctggggcataagcaaaaagcccagccaaaacaagcggat
atgtttggcggcgatgatgaaacagaaagcgaagccgcagatgaattggtaaaaaatcag
ttaaatttgaccgcttgcttaagccaacttaagccgattttagagaatgcggaaatccaa
aaaatcggacagaacatcaaatacgatttaaccattttcgccaaccatggcattgaactg
caaggtgtggcgttcgatacgatgatcgaatcctacacactcaacagcactggtcgtcat
aatatggacgatttggcggatcgctatttagggcataaaaccattccgtttgaagagctg
gctggcaaaggcaaaaatcagctgactttcgataaaatcgagatcgccaaagcggcggaa
tatgcagcggaagatgcggatgtcacaatgaagctccaccaagtgctttgggaaaattta
gcccaagagccggagttggtgaaattatttaatgaaatcgagatgccgcttgtgggcgtg
ctttctcgcattgaacgcaacggcgtgctgattgacccaaaaaaattactggctcaatcg
gcagaaattgaacaacgtttagcggaaattgagcaagctgttcacgctgaggcggggcag
gtgtttaatttggcgtccactaagcagttgcaagaaattctgtttgataaattaggcttg
ccggtgctgaagaaaaccccgaaaggggctccgtccaccaacgaagaggtgttggacgag
ctggctcaacaagggcatatcgtgccgaaattgttgatggaacaccgtggcttaagtaag
ctgaaatccacttacacggacaaattaccgcagttaattaatgctaaaacagggcgggtg
cacacctcttataaccaagcggtaacggcaacggggcgactttcatctagcgatccgaac
ttacagaatattccgatccgcaatgaagaaggcagacgcattcgccaagcctttgtggct
cgtgagggctacaaaattgtcgccgccgactattctcaaatcgagctacgcattatggct
catttagctgacgatgaaggcatgatcaccgcattcgcccaaggcaaagatattcaccgt
gcgaccgctgctgaaatttttggcgtggcgttagaggacgtgactagcgagcaacgccgc
agtgctaaggcgatcaacttcggactgatttacggaatgtcgtcattcgggctttccaac
caactgggcattggacgtgcggaagctcaaaaatatatggatctctacttccaacgctac
ccggcggttcagcaatttatgactgatattcgggaggtggcagcggaaaaaggctatgtg
gaaaccctattcggtcgccgtttgtatctgccggatattaaatccggtaatgcgatttta
cgcaaagcggcagagcgtgtggcaatcaatgctccaatgcaaggtacggcagcggatatt
atcaaagtggcgatgattggcattgataacgctattcgtgataatgatgacatcaaaatg
attatgcaggtgcacgatgaattggtgtttgaggtcaaagccgataaaatcgagcattac
agccagctaatcaaagcggaaatggaaaaatcgatctcgctcaaagtgccgttaattgct
gaagttggcgtaggtgataattgggatgaagctcattag
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