Mannheimia varigena USDA-ARS-USMARC-1296: X808_13940
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Entry
X808_13940 CDS
T03027
Name
(GenBank) Exodeoxyribonuclease V
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
X808_13940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvi03400
]
X808_13940
Enzymes [BR:
mvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
X808_13940
DNA repair and recombination proteins [BR:
mvi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
X808_13940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
ResIII
PDDEXK_1
DEAD
AAA_25
RIH_assoc
Motif
Other DBs
NCBI-ProteinID:
AHG75916
UniProt:
W0QBJ0
LinkDB
All DBs
Position
complement(1481072..1484596)
Genome browser
AA seq
1174 aa
AA seq
DB search
MNNLNPITLPLNKSVLIEASAGTGKTFTIANIYLRLLLGVGCLPLTVEQILVVTFTKAAT
EELKNRIRKNIQQCADFLKDKVNGECIEGKSYANNLEFLEQLYPHIHHIHEALLRLSIAE
REIDTASVFTIHSFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEDVWREQFYPQGVK
ESEIISAELTTPERALNAVRNYLASELPEPKAFLAQDFTEQLAQYNRFIDEVKSYWKANG
EALVEAIRHDLKNKTTLHGGWYRSATFETGVIVMNQWVNSSNRDLPDEFHLFTVGRIAAG
TKKSCEPMDLPQLAKNQDFLTAYQQQFKNSLKAILLYQFLIGLKTKLAEYKQSHPERGFD
DLLTMLNQALKNPQTGKALAQKIRSIYPFAMIDEFQDTDLTQYEIFSQIFMDGQSDNGFI
MIGDPKQSIYKFRGADIFTYLRAAKQADEQFTLGKNWRSLPEVVQAVNNLFHFANDEKSP
FLYDDIGFHPVEADSRKGKLMSEQGHFVCYTSDKTKLDDVAEICAYQIYQQLNAMCGGNF
GIKKNGEFKPFEPKDIAILVRKGSQAKRIKKALAKRNIKSVYLAESASVFGSEIATELCW
ILQAGLNPYNYKALLSALGSTLWGLSAVEIYRYKENEMLWDLKVNQFVEYSTIWKEQGIL
PMLHKIYLEQGIIERLKGLPNADRLITDLLHLTEILQETSQALESEAELVRWYEKEISSP
DFNDEQQLRLESEEELIKIITVHGSKGLQYPIVWLPFAAEKSEGDTKVNLGLYRNQKGDL
DWYLGEEEAKEQIQNEAYAEDLRLFYVALTRAESQLNLVLPKMISGWSPLHYLLAEGELP
KDEVSVADYFEKKQISADIIEVAEHLPFSRWESGKTEESYQAKTFSGNIRVVGQITSFTS
LYAQHERFSEGKAERVIDLAQDRDVHMELIEPDYTMETDAFSPFQFPHGIKVGTVLHSFF
EHCRFGEQIDKESVAKVCEQLGLSEEWLEPTLGWFERILATPLPEANFCLKEIDETKRLN
EWQFYLRLKNDKALHQLNALLKQHSPLAKNLPELQLPQLEGFVRGFVDCIVQMNGKFYLI
DYKSNFLGYLPQNYSTENIQREMGRQRYDLQYLLYTLAVHRYLTVRLSEYYDYERDFGGV
AYLFLRAMNGENASGVYFDKPSKLLIEEMDRLFG
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaataatctaaatcccatcacattacctttaaacaaatcagtcttaattgaagcctct
gcaggcacggggaagacatttaccattgccaatatttacctgcgtttattgctcggtgtc
ggctgcttgccacttactgttgaacaaattctggtggttacatttaccaaagcggcaacg
gaagagttgaaaaatcgtatccgaaaaaatattcagcaatgtgccgattttttaaaagat
aaagtgaatggagaatgcattgaaggaaaatcttacgctaataatcttgaatttttagag
cagctttatccgcatatccatcacattcacgaagcattattacgtttgagcattgccgaa
cgtgaaattgacactgccagtgtgtttaccattcacagtttctgccaaaaaatgttagtg
cagtttgccttcgaatcaggcgtgcggtttgatcttgatttacagccgaaccaatctgat
ttactgaaaaaattaagcgaagatgtatggcgagagcagttttatccgcaaggggtaaaa
gaaagtgaaattatttcagctgaattaactacacctgaaagggcgttaaatgcggtaaga
aattatttagcaagtgagttgcccgagccgaaagcgtttctagctcaagattttacggaa
cagttggcacaatataatcgatttattgatgaagtgaaatcttactggaaagccaatggt
gaagcgttagtggaagccattaggcacgatctcaaaaataaaacgacgttacacggtggt
tggtatcgctctgctacttttgaaacgggtgttattgtgatgaaccaatgggtaaattcg
tcaaatcgtgatttgccagacgaattccatctgtttactgtggggagaatagccgcaggc
acgaagaaaagttgtgagccaatggatttacctcaacttgcaaaaaatcaggattttttg
accgcttatcagcagcaatttaagaatagcttaaaagcgattttactctatcaattttta
ataggcttaaaaacgaagctggcagaatataaacaatctcacccggagcgtggttttgat
gatttactcacaatgcttaatcaagcgttgaaaaatccacaaactggcaaggcgttagcc
caaaaaattcgctctatttacccttttgcgatgattgatgagttccaagataccgatctt
acccaatatgaaattttcagccaaatttttatggatgggcagagcgataacggctttatt
atgatcggcgatccgaaacagtcgatctacaaatttcgtggggcggatattttcacttat
ttgagagcggcaaagcaggctgacgagcaatttacgcttggcaaaaactggcgttctttg
cctgaagtagtacaagcggtcaataatttgtttcattttgcaaatgatgagaaatcccca
tttctttatgatgacattggttttcatcctgttgaagcagacagtcgaaaaggtaagcta
atgagtgagcaagggcattttgtgtgctacaccagcgataaaaccaagctcgatgacgtc
gcagaaatttgtgcataccaaatttatcaacagcttaatgcaatgtgtggaggcaacttt
ggaattaagaaaaatggcgagttcaagccgtttgagccaaaagatattgccattttagta
agaaaaggctcgcaggcaaaacgcatcaaaaaagccctagccaagcgaaacattaaatca
gtttatttggcggaatcggcttcggtatttggttctgaaattgcaactgaactttgttgg
attttgcaagccgggcttaacccttacaattataaagcattattatccgccttaggttca
accctttgggggctgagtgcagtagaaatttatcgctacaaagaaaatgaaatgttgtgg
gatttaaaggtcaatcagtttgtggaatacagcaccatttggaaagagcaaggcattttg
ccgatgttgcataaaatctatttggagcaaggtattattgaacgattaaaaggcttgcca
aatgcggatcgtttaattactgatttactgcatttgacggaaattctgcaagaaacttcg
caggcgttggaatctgaagcggaactggtgcgttggtatgaaaaggaaattagctcaccc
gattttaatgatgaacagcaacttcgccttgaaagtgaagaagagctgattaaaattatt
accgttcacggctcgaaaggcttgcaatatccgattgtttggttgccgtttgctgcagaa
aaaagcgagggcgatacaaaggttaatttaggcttgtatcgtaatcaaaaaggtgatctg
gattggtatttaggtgaagaagaggcaaaagagcaaattcaaaatgaagcctatgcggaa
gatctccgtctgttttatgtggcattaacccgtgcagaatctcagctcaatttagtatta
cctaaaatgatttcaggctggagtccgctacattatttattggcagaaggtgaattaccg
aaagatgaagtgagtgttgcagactattttgagaaaaagcagatttcagccgatattatt
gaagtagcagagcatttaccttttagccgttgggaaagtggtaaaacggaggaaagttat
caagccaaaacctttagtggcaatattagggtagtggggcagattacgagttttacttca
ctttatgcacaacacgagcgttttagtgaaggtaaagcagaaagagtgatagatttagcc
caagacagagatgtccatatggaactcattgagccggattacacgatggaaactgatgct
ttttcaccattccaatttccgcacggcattaaagttggtactgtgttgcacagttttttt
gagcattgccgatttggcgaacaaattgataaagaaagtgtggcgaaagtgtgtgaacaa
ttaggtttaagtgaagaatggctcgagccaacattaggctggtttgagcgtattcttgct
actcctctgccggaagcaaatttctgtttaaaagagatcgatgaaactaaacggttaaat
gaatggcaattctatttacgcttaaaaaatgataaagctctgcaccaattaaatgcgtta
ttaaaacaacatagccctttagcaaaaaatttgcctgaactgcaattaccgcaattagaa
ggctttgtgcgtggttttgtggattgtattgtgcagatgaatggaaaattctatttgatt
gactacaaatcgaatttcttaggttatttgccacaaaattattccacagaaaatattcag
cgagaaatgggcagacagcgttatgatttacaatatttgctttatactcttgccgtgcac
cgttatctaactgttcgtctaagtgaatattacgattatgaacgtgattttggcggcgtt
gcgtatcttttcttacgggctatgaatggagagaatgcaagcggtgtttattttgacaaa
ccaagcaaattgctaattgaagaaatggataggttgtttgggtag
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