Mannheimia varigena USDA-ARS-USMARC-1296: X808_4270
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Entry
X808_4270 CDS
T03027
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X808_4270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvi03400
]
X808_4270
Enzymes [BR:
mvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X808_4270
DNA repair and recombination proteins [BR:
mvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
X808_4270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
DUF6007
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHG74950
UniProt:
W0QAU0
LinkDB
All DBs
Position
467202..470651
Genome browser
AA seq
1149 aa
AA seq
DB search
MSLILLNLPQTGGNFQDHQTLGNLVGHSDILAISQAAQQFNGLIVVVTPDTRTALRLEKS
LPQFAHLPVQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGRKQIFLLPINTLMQKVC
PPSYLANNVLLIKKGDRFSIQNLRLQLENAGYRAVDQVLEYGEYAVRGAILDLYPMGADE
PFRLDFFDDEIDSIRTFDVDTQRTKAEIAEINLLPAHEFPTDSNGIEHFRTKFRETFGEI
RREPEHIYQQVSKGILNAGIEYWQPLFFAEMASLFDYLPSNTLFVTYSDIQQKAEQFQKD
TQNRFESRRVDPMRPLLPPSDLWFAIDEVNRWLKGYPRLTITSEKIRKSAAKINANVASL
PDLAIQSGAKEPFTAFQQLHQKFKGNILFSVESEGRRETLLELLAPLGIKPKQISQISDE
IPPLALMISNLDQGFVIETSGQNLAIICETDLLGEKVQQKRSEKNRKTVNPDTLIRNLAE
LKIGQAVVHLENGVGRYGGLTVLDAGGMKAEYLVLHYANDAKLYVPVASLHLISRYIGGA
DETAPLHKLGSEAWAKTRQRAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDRFSAT
FPYEETDDQKMAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHKQVAILA
PTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQD
DVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSII
ASPPARRLSIKTFVRQSDEAVIREAILREILRGGQVYYLHNDVATIENCAEKLSQLVPEA
RVVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFGLAQL
HQLRGRVGRSHHQAYAYMLTQHPKTLTKDAEQRLEAMSTIDNLGAGFALATHDLEIRGAG
ELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPTLDEITQNQVEIELRVPALLPDDY
LPDVNMRLSFYKRIASSESLEQLKDLKIELIDRFGLLPEATKNLFAITQLRLAAQPLGLK
KIDAGIHGGYLEFKPTAQPDPMKFIQLIQKQPAVYSFEGAVKFKFRLPLEENNKRLEFVE
NLLNDIVAE
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaattttacttaatctgccgcaaaccggcggcaattttcaagatcatcaaact
cttggcaaccttgtcgggcattcggatattttggcaattagccaagccgctcaacagttt
aacggcttgatcgttgttgtcacccccgacacccgcacggcgttgcggttggaaaaatca
ctaccgcagtttgctcatcttcccgtgcaacttttccccgattgggaaaccttgccctac
gacaatttttcgccgcaccaagatattatttccgcccgactttccgctctgtttcagctg
caacagggcagaaagcagatttttctgttgccaatcaatactttaatgcagaaagtctgt
ccgccgagctaccttgccaacaatgtactgctgattaaaaaaggcgaccgcttttccatc
caaaacctccgcttgcagctcgaaaacgccggttatcgggcggtggatcaggtgctggaa
tatggcgaatatgcggtgcgtggagcgattttggatttgtacccaatgggggcggacgag
ccgtttcgcttggattttttcgatgatgaaattgactcaatccgcacctttgatgtcgat
acgcaacgcaccaaagcggaaatcgccgaaatcaacctgctgcccgcccacgagttcccg
acagatagcaacgggatcgagcattttcgcaccaaattccgtgaaacattcggcgaaatc
cgccgtgagccggagcatatttatcagcaggtcagcaaggggattttgaacgcagggatt
gagtattggcagccactgttttttgcggaaatggcgagtttgttcgattatctgccaagc
aatacgctatttgtgacttactccgatattcaacaaaaagccgagcaatttcaaaaagat
acgcaaaaccgttttgagagccgccgagtcgatccaatgcgtccgctgctgccaccaagt
gatctctggtttgcgattgatgaagtgaatcgctggctgaaaggctatccgagactgacg
ataacttcggagaaaatccgtaaatcggcagcgaaaatcaatgcaaatgtggcaagtttg
cccgatcttgccattcaatcaggagcgaaagaaccatttacagcgttccagcagctccac
cagaaattcaagggcaatattctgttttcggtggagagcgaagggcgacgggaaacgttg
ttggaactgctagcaccgttggggatcaaaccaaaacaaatttcgcaaatttctgacgaa
attccaccgcttgcgttgatgatttccaatttggatcagggttttgtgatcgaaacaagc
ggtcagaatttagcaataatttgcgaaaccgatctccttggcgaaaaagtccaacaaaaa
cgcagcgaaaaaaaccgtaaaaccgtcaatcccgataccctaatccgcaacttagcggaa
ctcaaaatcgggcaagcggtggtgcatttggaaaacggtgtaggtcgctatggcggtttg
accgtgttggacgcaggcggtatgaaagccgaatacttggtgctacattacgccaacgat
gccaagctctatgtgccggtagcatcgctccacttaatcagccgttatatcggcggagcg
gatgaaaccgccccgttgcacaaattaggcagcgaggcgtgggcgaaaacgcgtcagcgt
gcagcggagaaaatccgtgatgtggcggcggaattgcttgatgtctatgccaaacgggag
agccaaaccggttttgcctttgcctacgataaggcggagttcgatcgtttcagtgccact
ttcccttacgaggaaacggacgatcagaaaatggcgatcaacgccgttatcagcgatatg
tgccaagccaaagcgatggacagactggtgtgtggcgatgtcggtttcggcaaaactgaa
gtggcaatccgggcgactttcttggcggtgatgaaccataaacaggtcgctattctcgcc
ccaactacgctacttgcccagcaacattacgagaattttaaagaccgttttgccaactat
ccagtgaacgtggaagtgctttcccgttttaaaaccgccaaagagcagaaagcgattttg
gaaaaagtcgccgaaggcaaggtcgatattctagtcggtacgcacaaactgttgcaggac
gatgttgctttccgtgatctcggcttgctggtaattgacgaagaacaccgtttcggcgtg
cggcagaaagagaaaatcaaacagttgcgagccaatgtcgatattctgacgctcaccgcc
acgccaattccgagaacgctgaatatggcgttaaacggtatgcgtgatctctcgattatt
gccagcccaccggctcgccgcctgtcgatcaaaacctttgtgcgacaaagcgatgaggca
gtgattcgagaggcaattttgcgtgaaattctgcgtggcggacaggtttattacctgcat
aacgatgtcgctaccattgaaaactgcgctgaaaaattgagccaacttgttcccgaagcc
cgtgtggtgatcggtcacggtcaaatgcgtgagcgagagttggaacgagtgatgagcgat
ttttatcaccaacgctttaacctgctggtctgttcgaccattatcgaaacggggattgac
gtgccgactgccaatacgattatcatcgaacgggcggataaattcgggcttgcccagttg
caccaactgcgtgggcgtgtggggcgttcgcaccaccaagcctatgcctatatgctcacg
cagcacccgaaaacgctgaccaaagacgctgagcaacggctggaagcgatgagtaccatc
gacaatctcggagccggttttgccttggcgacccacgatttggaaatccgtggagcaggc
gaactgctaggcagcgagcagagcggacagatcgaaagtatcggcttttcgctctatatg
gacttgctcgaaaatgcggtcaaagccttgcaagaagggcgtgaaccgaccttggacgaa
atcacccaaaaccaagtggagattgagctacgagtgccagcgttactgccggacgattac
ttgccggatgtgaatatgcgactatcgttctacaaacggatcgcaagttcggaaagcctt
gagcagctcaaagatctcaaaatcgagctgatcgaccgtttcggattgctgccggaggcg
accaaaaacctgtttgcgattacccaactccgcctcgctgcccagccactcggcttgaag
aaaatcgatgcgggcatacacggcggttacttggagttcaaaccgaccgcccaacctgac
ccgatgaagtttattcagcttattcaaaaacaaccggcagtgtacagctttgaaggggca
gtgaaattcaagttcagattaccgctggaagaaaataacaagcggttggaatttgtggag
aatttgctaaacgatattgtggctgaatag
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integrated database retrieval system
