Mannheimia varigena USDA-ARS-USMARC-1296: X808_7260
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Entry
X808_7260 CDS
T03027
Name
(GenBank) RecQ protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X808_7260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvi03019
]
X808_7260
03400 DNA repair and recombination proteins [BR:
mvi03400
]
X808_7260
Enzymes [BR:
mvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X808_7260
Messenger RNA biogenesis [BR:
mvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X808_7260
DNA repair and recombination proteins [BR:
mvi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
X808_7260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HEM4
Hanta_Gn-B
zf-CXXC
DUF1015
Motif
Other DBs
NCBI-ProteinID:
AHG75249
UniProt:
W0Q8Q7
LinkDB
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Position
complement(768423..770222)
Genome browser
AA seq
599 aa
AA seq
DB search
MNTTAISVLNNVFGYQKFRDGQEEVISAVLENRDCLVIMTTGGGKSLCYQVPALCLDGIT
LVISPLISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQKALSGKLKLLYLSPEKVMT
QGFFHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPNVPLMALTATADPTT
RADILHHLRLNNPHIYLGSFDRPNIRYTVQEKFKPFEQLLKFINKQQGKSGIIYCNSRKK
VEEITEKLASRNISVLGYHAGMSFEQREFVQNAFQRDDIQVVVATIAFGMGINKSNVRFV
VHFDLPRSIESYYQETGRAGRDDLPSEAILFYDPSDYGWLQKILLEEPESEQRDIKQHKL
HAIGEFAESQTCRRLVLLNYFGEHKQEDCKNCDICLDPPQKYDGLLDAQKVMSVIYRTGQ
IFGQHHIIAVLRGMNNLKIREHNHDQLSVYGIGKEQSQHYWQNVVRQLIHLGLIYQNIAN
HSALQLTESARPFLRGEKPLQLALPRLGISATAFVQKQASHRYDKDLFARLRFLRKQIAD
KENIPPYIVFNDATLQEMAEFLPTSKVEMLEINGVGERKFERFGQAFMTLIKEHQNNRK
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaataccaccgcaatttctgttttaaataatgtttttggctatcaaaaattccgagat
gggcaagaagaagtcatttctgccgtgttggaaaatcgtgattgccttgtaattatgaca
acaggtggtggaaaatccctttgttaccaagtacctgctctatgtttggatggcataaca
ctcgttatttctccactgatttcgttaatgaaagatcaggtagatcagcttatcaccaac
ggtattgaagcggcttatctgaattccactcaaacgctcgaagaacaacaacttgtagag
caaaaagccttatcaggcaaattgaaattactttatctttctcctgagaaagtgatgaca
caaggcttcttccactttatctcgctctgtaaaattagttttattgccgtggatgaagcc
cattgtgtttcccaatggggacacgatttccgccctgaatacaccttgcttggtggcttg
cgaaatacgtttcctaacgtgccgttaatggcactaaccgccacagcagacccaacaaca
cgagcggatattcttcaccatttacgtctaaataatccacatatttatttaggtagtttt
gatcgcccaaatattcgctatacggtacaagaaaaatttaagccatttgagcagttgctg
aaattcatcaataaacaacagggaaaaagtggaattatttattgtaatagccgtaaaaaa
gtggaagaaattactgaaaaattagcttccagaaatattagtgtgctgggctatcacgca
ggaatgagttttgaacaacgagaattcgtacaaaatgcatttcaacgagatgacattcaa
gttgtggtggcaaccattgcttttggaatggggatcaacaaatcaaacgtccgttttgtt
gtacacttcgatcttccccgctctatcgaatcttattaccaagaaacaggacgtgccgga
cgagatgatcttccttcggaagcaatacttttctacgatccaagcgattatggctggcta
caaaaaatccttttagaagagcctgaaagcgaacaaagagacatcaaacagcacaagtta
cacgctatcggcgaatttgcggaatcacaaacttgccgccgcttagttttactcaattac
tttggcgaacataaacaagaagattgcaaaaactgcgatatttgcttagatccgccacaa
aaatatgatggcttactcgatgctcaaaaagtgatgtcggttatttatcgaacagggcag
attttcggtcagcaccacattattgctgtacttcgtggaatgaataacttaaaaattcgt
gaacacaatcacgatcaactttcagtttacggtattgggaaagaacagagccagcattat
tggcagaatgtggtaagacaactcattcatttaggactgatttatcaaaatatagctaat
cattcagctcttcaattaaccgaaagtgcaagaccttttttacgtggtgagaaaccgtta
caactggcattgccacgcttgggtatttccgccacagcatttgtgcaaaaacaagcaagc
catcgttatgataaagacctattcgctcgtcttcgcttcttgcgtaaacagattgctgat
aaggaaaatattccgccttatattgtatttaatgatgccacgttacaagaaatggcggaa
ttcctaccgacttcaaaagtggaaatgctcgaaataaacggtgtcggtgagcgaaaattt
gaacgatttggtcaagcatttatgacattaatcaaagaacatcaaaataaccgaaaatag
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