Mannheimia varigena USDA-ARS-USMARC-1296: X808_9450
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Entry
X808_9450 CDS
T03027
Name
(GenBank) Cold-shock DEAD box protein-A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X808_9450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvi03019
]
X808_9450
03009 Ribosome biogenesis [BR:
mvi03009
]
X808_9450
Enzymes [BR:
mvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X808_9450
Messenger RNA biogenesis [BR:
mvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X808_9450
Ribosome biogenesis [BR:
mvi03009
]
Prokaryotic type
rRNA helicases
X808_9450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
AAA_22
tRNA-synt_1b
Motif
Other DBs
NCBI-ProteinID:
AHG75468
UniProt:
W0QE18
LinkDB
All DBs
Position
complement(983376..985205)
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AA seq
609 aa
AA seq
DB search
MTTESLTFADLGLPQSILDAVTDMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLAQIDPAQRHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLDLSELKCIVLDEADEMLRMGFIDDVETVMAELPED
HQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLEKLRSGRLDILV
ATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
ENLIKKPIVEVSIPNHEVLMEKRREKFKARISKQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMLLQEKQKLILPPDPVVRAARSERGRDRNDRNGDRNDRRNGREHRDNNGVAMDLY
RIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHLVQHFAQKA
RVLNKQMQMSLLGPVNGGNDQPFESRGRRGGERRNDRNDRGGRRDGGFGKDRKGGFKEKR
FGEKRGRRD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgaatctttaactttcgccgacttaggtcttcctcaatcaatccttgatgcc
gtaaccgatatgggctttgtaaacccatcgcctattcaacaagagtgtattccgcattta
ttagccggtcgtgatgtgttaggtatggcacaaaccggtagcggaaaaacagccgctttc
tctttgccgttactcgctcaaatcgacccggctcaacgccacccgcaaatgttggtaatg
gctccaacccgtgaattagccatccaagtggcagacgcttgcgaacaattcgccaaaaat
atgaaaggcattcgcgtggttactgtttacggtggtcagcgttacgacatccaacttcgt
gccttaaaacaaggctcgcaagtagttgtgggtacaccaggccgtattcttgaccacatt
cgtcgtggcactttagatttatccgagcttaaatgtatcgtattagacgaagctgatgaa
atgttacgtatgggctttattgatgatgtggaaaccgtaatggcagaattgccggaagat
caccaaacggctctcttctctgcgacaatgccggagccgattcgccgcattacccgccgc
tttatgaaagatccgcaagaggtgaaaatcaaggcgactgaacgctctgccccagatatc
gagcaaagctactggttagtaaacggcttccgtaaaaatgacgcgttattacgtttctta
gaagtggaagagttcgatgcggctatcatctttacccgcaccaaaaccggcaccattgat
attaccgaattgtgcgaacgtaatggctaccgcacggcagccctcaacggcgatatgacc
caacaagctcgtgagcaaactttagaaaaattgcgctcaggtcgtttagatattttagtg
gcaacagacgtagctgctcgtggtatcgacatcgaacgtatcagcctagtaattaactat
gacattccgcttgaagaagaatcttacgttcaccgtatcggtcgtaccggtcgtgccggt
cgttcaggtcgtgcattattattcgttgagcctcgtgaacgccgcttactgcgtaatatt
gaaaacctgatcaaaaaaccgattgttgaagtttcaattccaaaccatgaagtgttaatg
gaaaaacgccgtgagaaattcaaagctcgtatttctaaacagttagagcatcacgattta
gagaaataccgtgagttgttggaagatttattcactgcagaccaagatcacgaagagtta
gcggcagcaatgatgatgttattgcaagagaaacaaaaattgattcttccaccagatccg
gttgtgcgtgcggctcgttcagagcgtggtcgtgatcgcaatgacagaaacggtgacaga
aatgaccgccgcaatggtcgtgagcatcgtgataacaacggtgtggcgatggatttatac
cgtatcgaacttggtcgtgaagatggtgtggaagtgcgtcatatcgtgggagccatcgct
aacgaaggcgacatcagcagccgctatatcgggcatatcaaattgcacgatacttactcc
accatcgaattaccacaaggtatgccgaatcacttagtgcaacacttcgctcaaaaagcg
cgtgtgttgaataaacagatgcaaatgtcattgttagggccggtaaatggcggaaacgac
caaccgtttgaatctcgtggtcgccgtggtggtgaacgccgtaatgacagaaatgaccgt
ggcggacgccgtgatggcggtttcggtaaagatcgcaaaggcggttttaaagaaaaacgc
tttggtgaaaaacgtggtcgccgtgactaa
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