KEGG   Mannheimia varigena USDA-ARS-USMARC-1296: X808_9450
Entry
X808_9450         CDS       T03027                                 
Name
(GenBank) Cold-shock DEAD box protein-A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
mvi  Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X808_9450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mvi03019]
    X808_9450
   03009 Ribosome biogenesis [BR:mvi03009]
    X808_9450
Enzymes [BR:mvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     X808_9450
Messenger RNA biogenesis [BR:mvi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     X808_9450
Ribosome biogenesis [BR:mvi03009]
 Prokaryotic type
  rRNA helicases
   X808_9450
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 DRTGG AAA_22 tRNA-synt_1b
Other DBs
NCBI-ProteinID: AHG75468
UniProt: W0QE18
LinkDB
Position
complement(983376..985205)
AA seq 609 aa
MTTESLTFADLGLPQSILDAVTDMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLAQIDPAQRHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLDLSELKCIVLDEADEMLRMGFIDDVETVMAELPED
HQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLEKLRSGRLDILV
ATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
ENLIKKPIVEVSIPNHEVLMEKRREKFKARISKQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMLLQEKQKLILPPDPVVRAARSERGRDRNDRNGDRNDRRNGREHRDNNGVAMDLY
RIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHLVQHFAQKA
RVLNKQMQMSLLGPVNGGNDQPFESRGRRGGERRNDRNDRGGRRDGGFGKDRKGGFKEKR
FGEKRGRRD
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgacaactgaatctttaactttcgccgacttaggtcttcctcaatcaatccttgatgcc
gtaaccgatatgggctttgtaaacccatcgcctattcaacaagagtgtattccgcattta
ttagccggtcgtgatgtgttaggtatggcacaaaccggtagcggaaaaacagccgctttc
tctttgccgttactcgctcaaatcgacccggctcaacgccacccgcaaatgttggtaatg
gctccaacccgtgaattagccatccaagtggcagacgcttgcgaacaattcgccaaaaat
atgaaaggcattcgcgtggttactgtttacggtggtcagcgttacgacatccaacttcgt
gccttaaaacaaggctcgcaagtagttgtgggtacaccaggccgtattcttgaccacatt
cgtcgtggcactttagatttatccgagcttaaatgtatcgtattagacgaagctgatgaa
atgttacgtatgggctttattgatgatgtggaaaccgtaatggcagaattgccggaagat
caccaaacggctctcttctctgcgacaatgccggagccgattcgccgcattacccgccgc
tttatgaaagatccgcaagaggtgaaaatcaaggcgactgaacgctctgccccagatatc
gagcaaagctactggttagtaaacggcttccgtaaaaatgacgcgttattacgtttctta
gaagtggaagagttcgatgcggctatcatctttacccgcaccaaaaccggcaccattgat
attaccgaattgtgcgaacgtaatggctaccgcacggcagccctcaacggcgatatgacc
caacaagctcgtgagcaaactttagaaaaattgcgctcaggtcgtttagatattttagtg
gcaacagacgtagctgctcgtggtatcgacatcgaacgtatcagcctagtaattaactat
gacattccgcttgaagaagaatcttacgttcaccgtatcggtcgtaccggtcgtgccggt
cgttcaggtcgtgcattattattcgttgagcctcgtgaacgccgcttactgcgtaatatt
gaaaacctgatcaaaaaaccgattgttgaagtttcaattccaaaccatgaagtgttaatg
gaaaaacgccgtgagaaattcaaagctcgtatttctaaacagttagagcatcacgattta
gagaaataccgtgagttgttggaagatttattcactgcagaccaagatcacgaagagtta
gcggcagcaatgatgatgttattgcaagagaaacaaaaattgattcttccaccagatccg
gttgtgcgtgcggctcgttcagagcgtggtcgtgatcgcaatgacagaaacggtgacaga
aatgaccgccgcaatggtcgtgagcatcgtgataacaacggtgtggcgatggatttatac
cgtatcgaacttggtcgtgaagatggtgtggaagtgcgtcatatcgtgggagccatcgct
aacgaaggcgacatcagcagccgctatatcgggcatatcaaattgcacgatacttactcc
accatcgaattaccacaaggtatgccgaatcacttagtgcaacacttcgctcaaaaagcg
cgtgtgttgaataaacagatgcaaatgtcattgttagggccggtaaatggcggaaacgac
caaccgtttgaatctcgtggtcgccgtggtggtgaacgccgtaatgacagaaatgaccgt
ggcggacgccgtgatggcggtttcggtaaagatcgcaaaggcggttttaaagaaaaacgc
tttggtgaaaaacgtggtcgccgtgactaa

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