Mannheimia varigena USDA-ARS-USMARC-1296: X808_9980
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Entry
X808_9980 CDS
T03027
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvi03032
]
X808_9980
03036 Chromosome and associated proteins [BR:
mvi03036
]
X808_9980
03400 DNA repair and recombination proteins [BR:
mvi03400
]
X808_9980
DNA replication proteins [BR:
mvi03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
X808_9980
Chromosome and associated proteins [BR:
mvi03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
X808_9980
DNA repair and recombination proteins [BR:
mvi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
X808_9980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
S1-like
HU-CCDC81_bac_1
Motif
Other DBs
NCBI-ProteinID:
AHG75521
UniProt:
W0QAE2
LinkDB
All DBs
Position
1050695..1050976
Genome browser
AA seq
93 aa
AA seq
DB search
MTKSELIESLASKNPNLPLKTVEGAVKEILEHLTATLEKAERVEIRGFGSFSLHYRQPRL
GRNPKTGESVLLTAKYVPHFKAGKELKERVDLL
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgactaaatctgaattaattgagagtttagcatctaaaaatccaaacttaccgttaaaa
acggtagagggtgctgtaaaagaaattttagagcatttaaccgcaactttagaaaaagcg
gaaagagtagaaataagaggatttggtagtttctctttacactatcgtcaaccacgttta
ggtcgtaatcctaaaacaggtgagagtgtattactaacagcaaaatatgtgcctcatttt
aaagcgggtaaagagttaaaagagagggtagatctactttaa
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