Mycolicibacter virginiensis: MJO54_04935
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Entry
MJO54_04935 CDS
T08150
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mvm
Mycolicibacter virginiensis
Pathway
mvm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MJO54_04935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvm03400
]
MJO54_04935
Enzymes [BR:
mvm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MJO54_04935
DNA repair and recombination proteins [BR:
mvm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MJO54_04935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ULP48479
LinkDB
All DBs
Position
1002626..1004911
Genome browser
AA seq
761 aa
AA seq
DB search
MVAESVQTRVKLTNADKVLYPATGTTKAEVYDYYTRIAEVMLPHIAGRPATRKRWPNGVE
QASFFEKQLAASAPGWLARADIAHRSGITTYPIIEDLDGLAWIAQQAALEVHVPQWRFEA
EWTHGGKVVKPGLATRLVFDLDPGEGVTMSQLAEVARAIRDLMSELGLDTFPVTSGSKGV
HLYAALERPVSSAGAATVAKRIAQQLETAMPELVTAAMAKKLRAGKVFLDWSQNNAAKTT
IAPYSLRGRDHPTVAAPRTWAELDDPGLRQLRFDEVLDRVERDGDLLAGLDGPLEGQDRL
AVYRAKRDAGRTPEPVPAAAPEPGAGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PESTSVNHLAVRTEDHPLEYGSFEGIIPKGEYGAGTVRIWDSGTYVTEKFEDGAEKGEVI
VVLAGSRISGRYALIRTGGDQWLAHRMKDQQAFTFNELAPMLATHGSVARLDPSQWAFEG
KWDGYRLLVEAEHGRLRLRARSGRDVTGEYPQLPFPAADLAEHHLVLDGELVALDDDGVP
SFAAMQNSARSTRLAFWAFDLLYLDGRPLLRVAYRDRRRLLETLARGTDLVVKDLLTPDG
AKALEQSRKLGWEGVIAKKWDSPYQAGRRSTAWVKEKYWRTQEVVIGGWRAGEGARGGGI
GSLLMGIPEGDDGLRFVGRVGTGFTERQLAALKKILVPLRAGESPFGAPLPAPDAKGVTF
VEPTVVGEVRFSERTADGRLRQPSWRGLRPDKTPDEVVGED
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggtcgctgagtccgtccagacccgggtcaagctgaccaacgccgacaaggtgctttac
cccgctacgggcaccaccaaggccgaggtctacgactactacacccgcatcgccgaagtg
atgctgccgcacatcgcgggacgcccggcgacgcgcaaacgctggcccaacggtgtcgag
caggcgtcattcttcgagaagcagttggccgcctcggcaccgggctggttggcccgcgcc
gacattgcgcatcggtccgggatcaccacctatccgatcatcgaggacctcgacggcctg
gcctggatcgcccagcaggctgcactggaagttcacgtaccgcagtggcgtttcgaggcc
gagtggacccacggtgggaaggtagtcaagcctggactggcgacgcgcctggtcttcgac
ctcgaccccggcgagggcgtgacgatgagccaactcgcagaagtggcgcgagccatccgg
gacctgatgtccgagctggggctggacacctttccggtcaccagcggcagcaagggagtg
cacctgtacgccgccctcgagcgcccggtgagcagcgctggcgcggccacggtagccaaa
cgcattgcacaacaactcgaaaccgcgatgcccgaactggtgacggcggccatggccaag
aagctgcgggccggcaaggtgtttctcgactggagtcagaacaacgcggccaagaccacc
atcgcgccgtactcgctgcgcggccgagaccatccgacggtcgccgccccacgcacttgg
gccgagctggacgacccgggcctgcgccagctgcgctttgacgaagtgctggaccgcgtt
gagcgcgacggcgacctgttggccggtctggacggccccctggaaggccaagatcgtctg
gccgtgtatcgggccaaacgtgacgcgggccggacccccgaaccggtaccggccgcggcc
ccggagccaggtgcgggcaatagcttcgtcatccaggagcatcacgcccgccggctgcac
tacgacttccggctggagcgcgacggggtgttggtgagctgggcggtgcccaagaacctc
ccggaatccacgtcggtcaaccatctcgcggtgcgcaccgaggaccacccgctggaatac
ggcagcttcgaaggcatcatccccaagggcgagtacggcgcgggcaccgtgcgcatctgg
gattcgggcacctatgtgaccgagaagttcgaggacggtgccgaaaaaggggaggtgatc
gtcgtgctcgccggcagccggatctccgggcgatacgcactgatccgcactggcggtgat
cagtggctggcgcaccggatgaaagaccagcaggcattcaccttcaacgagctggcccca
atgctggccacgcacggctcggtggcgcggctggacccaagccaatgggctttcgaaggc
aagtgggacggctaccggctgctagtggaagccgaacacggtcggctgcggctgcgcgcc
cgcagcggacgcgacgtgaccggcgaatacccgcagctgccgtttccggccgccgactta
gccgagcaccacctggtgctcgacggcgaactcgtcgcgctcgacgacgacggtgtcccc
agcttcgctgccatgcagaacagcgcccgttcgacgcgcctggcgttctgggctttcgat
ctgctctacctcgacgggcgcccgctgttgcgggtggcctatcgggaccgtcgccgtctc
ctggaaaccctggcgcgcggaaccgatctggtggtcaaagatctgttgacacccgacggt
gcgaaggcgctcgagcagtcccgcaagctgggctgggaaggggtgatcgccaagaagtgg
gattcgccctatcaggcggggcgccgttcgacggcgtgggtcaaggagaagtactggcgg
acccaggaggtcgtaatcggcggttggcgggctggcgagggagcgcgcggcggggggatc
gggtcgctgctgatgggcattcccgagggtgacgacggcctgcggttcgtcggccgggtc
ggtacgggtttcaccgagcgccagctggccgccctgaagaagatattggtgccgctccgc
gccggcgaatcaccttttggggcaccgcttcccgcaccggacgccaagggcgtcacgttt
gtggaaccgaccgtggtcggcgaagtgcgcttcagtgaacgcacggccgatggccggctg
cgccagcccagctggcgcggactgcggcccgacaagaccccggatgaggtggtgggtgag
gattga
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