Mycolicibacterium vaccae: MYVA_1070
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Entry
MYVA_1070 CDS
T04356
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mvq
Mycolicibacterium vaccae
Pathway
mvq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MYVA_1070 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvq03021
]
MYVA_1070 (rpoC)
03400 DNA repair and recombination proteins [BR:
mvq03400
]
MYVA_1070 (rpoC)
Enzymes [BR:
mvq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MYVA_1070 (rpoC)
Transcription machinery [BR:
mvq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MYVA_1070 (rpoC)
DNA repair and recombination proteins [BR:
mvq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MYVA_1070 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
ANI38295
LinkDB
All DBs
Position
1113461..1117423
Genome browser
AA seq
1320 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVNDEMRHNELSTLEAEMAVERKAIEDQRDADLEARAQKLEAD
MKELEDEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDELL
YRELQDRYGEYFEGAMGAESIKKLIETFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFFLTTEIPGDTGEYT
PAAKDTPETGVYSSPAEAIMAMDRGSLSVRAKIKVRLTTQRPPADIEAERFPDGWNMGDA
WTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPEKTEILERYEAEADSIEKQYQRGKLNKGERNEALVKIWQDA
TEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVTL
AELQGTGKDAALVRDQHIETSAYARTLASDAVDANGNVVVERGHDLGDPAIDALLAAGIT
EVKVRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQG
GVTGGADIVGGLPRVQELFEARIPRNRAPIADVSGRVRLEESDKFYKITIVPDDGGEEVV
YDKLSRRQRLKVFKHDDGSERLLTDGDHVDVGQQLLEGSADPHEVLRVQGPREVQIHLVK
EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAE
GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGK
LIPAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggacgacatc
cgcaactggtccttcggcgaggtcaaaaagccggagaccatcaactaccgcacgctcaag
ccagagaaggacggcctgttctgcgagaagatcttcggacctactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgctccc
gtcacgcacatctggtacttcaagggcgtgccgtcgcggttgggctacctgctcgacctg
gccccgaaggatctcgagaagatcatctacttcgcggcctacgtgatcaccgcggtcaac
gacgagatgcgccacaacgagctgtccacgctggaagccgagatggccgtcgagcgtaag
gcgatcgaggatcagcgcgacgccgacctggaggcacgggcgcagaagctcgaggccgac
atgaaggagctcgaggacgaaggcgccaagagcgacgtcaagcgcaaggtgcgtgacggc
ggcgagcgtgagatgcgccagctgcgcgaccgggcccagcgtgagctggaccggctcgac
gagatctggacgacgttcaccaagctggctcccaagcagctgatcgtggacgagctgctc
taccgcgagctgcaggaccgctacggcgagtacttcgaaggcgccatgggtgccgagtcg
atcaagaagctcatcgagaccttcgacatcgacgccgaggccgagtcgctgcgcgacacc
atcaagaacggcaagggccagaagaagctgcgtgcgctgaagcgactcaaggtcgtcgcc
gcgttccagacgaaccggaactcgccgatgggcatggtgctcgacgctgttccggtgatc
ccgccggagctgcgcccgatggttcagctcgacggtggtcgtttcgcgacgtcggatctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccggcccgtcaccgggcccggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgtggtctgcccaagctgatggcactcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatctcggagcacccggtgctgctgaaccgc
gcaccaaccctgcaccgcctcggtatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggcgaccag
atggccgtgcaccttccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgcccgcgtcgggccgcccgctggccatgccgcgtctggac
atggtgaccggtctgttcttcctgaccaccgagatcccgggtgacacaggcgagtacacc
ccggccgccaaggacaccccggagaccggcgtctacagcagcccggccgaggcgatcatg
gccatggaccgcggttcgctgagcgtgcgcgccaagatcaaggtgcggctgaccacccag
cgtccgccggccgacatcgaggccgagcggttccccgacggctggaacatgggcgacgcc
tggacggcggagaccaccctgggccgtgtgctgttcaacgagctgctgccgcggggctac
ccgttcgtcaacaagcagatgcacaagaaggtccaggcggcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtggtcgcgcagaccgtggacaagctcaaggacgccgggttc
cactgggccacccgttcgggtgtcaccgtgtcgatggccgacgtgctggtcccgccggag
aagaccgagatcctcgagcgctacgaggcggaagccgacagcatcgagaagcagtaccag
cgcggcaagctcaacaagggcgagcgcaacgaagcgttggtgaagatctggcaggacgcg
accgaagaggtcggtcaggcgctgcggtcgcactacccgaaggacaacccgatcatcacg
atcgtggattcgggtgcgacgggtaacttcacccagacgcggacactggccggcatgaag
ggtctggtgaccaaccccaagggcgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggtctgacggtgctggagtacttcatcaacacccacggcgcccgtaagggcctggcg
gacaccgcacttcgtaccgccgactcgggttacctgacccgtcgtctggtcgacgtgtca
caggacgtcatcgtgcgcgagaccgactgtgagaccgagcgcggcatcaccgtcacgctg
gccgaactgcagggcaccggtaaagacgcggccttggtgcgcgatcagcacatcgagacg
tcggcctacgcgcggacgctggccagcgacgcggtcgacgccaacggcaacgtcgtcgtc
gagcgtgggcacgatctcggtgacccggcgatcgatgcgctgctggccgccggcatcacc
gaggtgaaggtccgctccgtgctgacctgcggcaccggcaccggcgtgtgcgcgatgtgc
tacggccgttcgatggcgaccggcaagctggtcgacatcggcgaggccgtcggcatcgtg
gccgcgcagtccatcggtgagcccggcacgcagctgacgatgcgtaccttccaccagggt
ggtgtcaccggcggtgccgacatcgtcggtggtctgccccgcgtgcaggagctgttcgag
gcgcgtatcccgcgcaaccgggctccgatcgccgacgtctccggccgggtccggctggag
gagagcgacaagttctacaagatcaccatcgttcccgacgacgggggcgaggaggtcgtg
tacgacaagctctcgcgtcgtcagcgtctgaaggtgttcaagcacgacgacggctccgag
cgtctgctgaccgacggcgaccacgtcgacgtcggccagcagctgctggaaggttcggcc
gacccgcacgaggtgctgcgcgtccagggtccccgcgaggtgcagatccacctcgtcaag
gaggtccaggaggtctaccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtc
atcgtccggcagatgctgcgtcgcgtcacgatcatcgattcgggtgcgacggagttcctg
cccggctcgctgaccgagcgtggcgagttcgagaccgagaaccgtcgcgtcgtggccgag
ggtggcgagcccgcggccggacgtccggtgctgatgggtatcacgaaggcatcgctggcc
acggattcgtggctgtcggcggcgtcgttccaggagaccacccgcgtgctgaccgatgcg
gcgatcaactgccgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaag
ctgatcccggcaggcaccggcatcaaccggtaccgcaacatccaggtgcagccgaccgag
gaagcccgcgctgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggac
ttcggccaggccaccggcgccgcggtgccgctggacgattacggctactcggactaccgg
taa
DBGET
integrated database retrieval system
