Mycolicibacterium vaccae: MYVA_4136
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Entry
MYVA_4136 CDS
T04356
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
mvq
Mycolicibacterium vaccae
Pathway
mvq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mvq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MYVA_4136 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mvq03000
]
MYVA_4136 (alkA)
03400 DNA repair and recombination proteins [BR:
mvq03400
]
MYVA_4136 (alkA)
Enzymes [BR:
mvq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MYVA_4136 (alkA)
Transcription factors [BR:
mvq03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MYVA_4136 (alkA)
DNA repair and recombination proteins [BR:
mvq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MYVA_4136 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
DUF6233
DUF7437
Motif
Other DBs
NCBI-ProteinID:
ANI41239
LinkDB
All DBs
Position
4302389..4303879
Genome browser
AA seq
496 aa
AA seq
DB search
MHTDFDRCYRAVQSKDARFDGWFVTAVLTTGIYCRPSCPVRPPYARNMRFYPTAAAAQRA
GFRACKRCRPDASPGSPEWNVRGDVVARAMRLIADGTVDREGVGGLAARLGYTVRQLERL
TNAELGASPLALARAQRTQMARVLIETTEMPFTDAAFAAGFSSIRQFNDTVRAVCALTPT
MLRRRARTRRDGDGDGGTSVLSLRLPVRAPFAFEGVFGHLAASAVPGVEEVRNGTYRRTL
RLPHGRGVVSLTPHPDHVGCRLVIDDFRDLAAAIARCRRLLDLDADPEAVVAALSADDRL
AALVAKQPGQRIPRTVDEHELAVRVILGQQVSVAAARTHAGRLCRAYGLPIDDPEGNLTH
VFPSVAELSEIDPRHLAFPKVRQRTLHALVSALADGTVTLDAGCDREAARAQLLGLPGIG
PWSTEMIAMRGLGDPDAFPGTDLGVIAAARQLGLPETPRGLAEHSRRWQPWRSYATQHLW
TALDHAVNQWPPKETS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
gtgcacaccgatttcgaccgctgctaccgggccgtccagtccaaggacgcccggttcgac
ggctggttcgtcacggcggtgctcaccaccgggatctactgcaggcccagctgcccggtc
cggccgccgtacgcccgcaacatgcggttctacccgaccgcggccgccgcgcagcgggcc
ggcttccgggcgtgcaagcggtgcaggcccgacgcatcgccggggtctcccgagtggaat
gtgcgcggtgacgtcgtcgcccgcgccatgcggctgatcgccgacgggacggtcgaccgc
gaaggcgtcggcggcctggccgcccggttgggctacaccgtgcggcaactggaacggctc
accaatgctgagctgggtgccagtccgctggcgctggcccgggcgcagcgcacccagatg
gcccgggtactgatcgagacgaccgagatgccgttcaccgacgccgctttcgcggctgga
ttctccagcatccggcagttcaacgacaccgtgcgtgcggtctgcgcgctgacgcccacg
atgctgcggcgccgcgccaggacacggcgggacggtgacggtgacggagggacgagcgta
ctgtcgctgcggctcccggtccgggcgccgttcgcgtttgaaggcgtcttcgggcacctg
gccgcctccgccgttccgggtgtggaggaagtccggaacgggacataccgcagaactctg
cggttaccgcacggccgcggcgtggtgagtctgacgccccatcccgaccacgtcggatgc
cgcctggtcatcgacgactttcgcgacctggcggccgcgatcgcgcgctgccggcgcctg
ctcgacctcgatgccgacccggaggccgtcgtcgccgcgctcagcgctgacgacagactt
gccgcgctggtcgccaagcagccgggccagcgcatcccgaggaccgtggacgaacacgaa
ctggcggtgcgggtgatcctcggccagcaggtgtcggtggctgccgcgcgtacccacgcc
ggtcggctctgccgggcctacggtctcccgatcgacgatcccgaagggaacctcacccat
gtgttcccgtccgtggccgagctttcggagatcgacccccggcatctggcgttcccgaaa
gtgcgacaacggaccctgcatgccctggtctccgcactcgccgacggcaccgtcacgctc
gacgccggctgtgaccgggaggcagcgcgcgcgcaactgctcgggctgcccggtatcggg
ccgtggtcgacggagatgatcgcgatgcgcggtctcggcgatcccgacgcgtttcccggc
acggatctcggcgtgatcgccgcggctcgacaactaggcctgccggagacaccgcgcgga
ctcgccgaacacagcaggcgctggcagccctggcgctcctatgccacccagcatctgtgg
actgcgctcgaccacgccgtcaaccaatggccaccgaaggagacatcgtga
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