Mycolicibacterium vaccae: MYVA_4246
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Entry
MYVA_4246 CDS
T04356
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mvq
Mycolicibacterium vaccae
Pathway
mvq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYVA_4246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvq03019
]
MYVA_4246
03009 Ribosome biogenesis [BR:
mvq03009
]
MYVA_4246
Enzymes [BR:
mvq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYVA_4246
Messenger RNA biogenesis [BR:
mvq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYVA_4246
Ribosome biogenesis [BR:
mvq03009
]
Prokaryotic type
rRNA helicases
MYVA_4246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Surface-like_ins_dom
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANI41343
LinkDB
All DBs
Position
complement(4425797..4427485)
Genome browser
AA seq
562 aa
AA seq
DB search
MSSTNADPEPADLTFADLQIHPAVLQAVADVGYESPSPIQAATIPAILAGSDVVGLAQTG
TGKTAAFAIPILSKIDTDSRTTQALVLAPTRELALQVAEAFGRYGAKLRVNVLPIYGGSS
YVPQLAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERIL
ADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYYQVSYPRKMD
ALTRLLETEQGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDG
TIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRER
HLLGAIERVTRQKLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRTLVEGYERDH
DVPMADIAAALALQSRNGEEFLMTEPPPEKRRERPERGDRSDAPPRKPRERRSDLATYRI
AVGKRHKVAPGAIVGAIANEGGLHRSDFGHITIKVDYSLVELPAKLPPKTLKSLENTRIQ
GQLIHLEPDRGPKPHRGKHTSQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagctctacgaacgctgaccctgaacccgctgatctcaccttcgccgacctgcagata
cacccggcggtgctgcaggcggtcgccgacgtcggttatgagtcgccctcgcccatccag
gcggcgaccatcccggcgattctggcaggctccgacgtcgtcgggctggcccagaccggg
accggcaagacagcggccttcgcgatcccgatcctgtccaagatcgacaccgacagccgc
accacccaggcgctggtgctggcgccgacccgcgagctcgcgctgcaggtcgccgaggca
ttcggccgctacggcgccaagctccgcgtcaacgtgctgccgatctacggcggctcgtcc
tacgtgccgcagctggccggactcaagcgcggcgcgcaggtcgtcgtcggcacaccgggc
cgggtgatcgaccatctggagaagggcagcctggacctctcgcatctggattacctcgtg
ctcgacgaggccgacgagatgctgcagatgggcttcgccgaggatgtcgagcgcatcctg
gccgacacccccgaatacaagcaggtcgcgttgttctcggcgaccatgccgccggcgatc
aagaagatcaccgccaaatacctgcacgatccggtcgaggtcacggtcaagtccaagacc
cagaccgcagagaacatcacacagcgctactaccaggtgtcctatccgcgcaagatggac
gcgctgaccaggctgctggaaaccgagcagggcgacgcgatgatcgtgttcgtccgcacc
aagcaggccaccgaagaggtcgccgagaagttgcgggcgcggggattcgccgcggcggcg
atcaacggcgacatcccgcaggcggtccgcgagcgcaccatctcgcagctcaaagacggg
accatcgacatcctggtcgccaccgacgtcgcggcccgcggcctcgacgtcgagcgcatc
tcgcacgtggtgaacttcgacatcccgcacgacccggagtcctatgtgcaccgcatcggg
cgcaccggacgcgcggggcggtcgggcaccgcgctgctgttcgtgacgccgcgcgaacgc
cacctgctcggcgcgatcgagcgggtcacgcgccagaagctggtggagtccgaactgccg
tcggtcgacgacgtcaacgagaagcgggtcgcgaagttccgcgactcgatcaccgacgcg
ctggacaagcccggcatcgacctgttccgcacgctggtcgagggttacgagcgcgaccac
gacgtcccgatggccgacatcgccgcggcgctggcactgcagagccgcaacggcgaagag
ttcctgatgaccgagccgccgccggagaagcggcgcgagcgtcccgagcggggcgaccgg
agcgacgccccgccgcgtaagccccgcgagcgccgcagcgacctcgcgacctaccgcatc
gccgtcggcaagcggcacaaggtcgcgcccggcgcgatcgtcggcgccatcgccaacgag
ggcgggctgcaccgcagcgacttcggccacatcaccatcaaggtcgactactcgctggtg
gagctgccggccaagctgccgccgaagacgctgaagtcgttggagaacaccaggatccag
ggtcagctgatccatctcgaacccgatcgcgggccgaaaccgcatcgggggaagcacacg
tcgcagtga
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integrated database retrieval system
