Mycolicibacterium vaccae: MYVA_5122
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Entry
MYVA_5122 CDS
T04356
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mvq
Mycolicibacterium vaccae
Pathway
mvq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYVA_5122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvq03019
]
MYVA_5122
03400 DNA repair and recombination proteins [BR:
mvq03400
]
MYVA_5122
Enzymes [BR:
mvq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYVA_5122
Messenger RNA biogenesis [BR:
mvq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYVA_5122
DNA repair and recombination proteins [BR:
mvq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MYVA_5122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
SWI2_SNF2
KORA
Motif
Other DBs
NCBI-ProteinID:
ANI42176
LinkDB
All DBs
Position
complement(5336410..5338482)
Genome browser
AA seq
690 aa
AA seq
DB search
MATRPQAQALLEQLAGPHAQLRDDQWTAIEALVVHRRRALVVQRTGWGKSAVYFIAAKLL
RAAGRGPTVIVSPLLALMRNQVDAAARAGVRAATINSSNVTEWDEVHQRVNAGELDVLLV
SPERLNNPDFRDAVLPALAADAGLVVVDEAHCVSDWGHDFRPDYRRIRTLIGELGAGIPV
LATTATANDRVVADVAAQLGVGGTDTLVLRGGLDRESLRLSVVHAGGPAQRAAWLAAHLN
ALPGSGIVYTLTVAQANDVAALLREQGHAVAAYTGGTEAAEREQLEADLLANRVKALIAT
SALGMGFDKPDLGFVVHLGAPSSPIAYYQQVGRAGRSTASAEVILLPGREDADVWRYFAS
VAFPPEALVRKVIDALEPDRAQSTAALEPLVDLNRSRLEMVLKVLDVDGAVRRVKGGWIS
TGQPWEYDEARYRRLDEARKREQQAMLDYQSTDGCRMSFLRSQLDDPELGPQPCGRCDNC
AGPRYIADVDAEQAETTRLRLMRPGVEIAPRKQWPTGLAKLGLEMSGRISDGPSPGRAIG
RLTDLGWGARLRKLLADPDAEVSDDVLGAAVAVLKAWEWQQRPTAVLALDSATRPKLISS
LAARLAEVGRLENLGVLEYSHDHRPTSAANSAYRVAALHGAWVPPGGVAGARVLLVDDLT
DTGWTMTMAARAVRAAGAAEVLPFALAATS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgagaccgcaggcccaggcactgctcgaacaactggcaggcccgcacgcccag
ctacgcgatgaccagtggacggccatcgaggcgctggtcgtgcatcgtcgccgggcactg
gtcgtgcagcggaccggatggggaaagtcggcggtctacttcatcgccgcgaaactgctg
cgtgccgcgggccgcgggcccacggtgatcgtctcgcccctgctggcgctcatgcgcaac
caggtcgatgcggccgcccgagccggggtgcgggcggcgacgatcaactccagcaatgtc
accgaatgggacgaggtgcaccagcgggtcaacgcgggtgagctcgacgtcctgctggtc
agccccgaacggctgaacaaccccgacttccgcgacgcggtgctgccggccctggccgcc
gacgccggcctggtggtggtcgacgaagcgcactgcgtctcggactggggccacgacttc
cggcccgactaccgacgcatccgcaccctgatcggcgagctcggcgccggcatcccggtg
ctggccaccactgcgaccgccaacgatcgggtggtcgccgatgtggcggctcaactgggt
gtcggcggtaccgacaccctggtgctgcgcggcggcctggaccgggagtcactgcggctg
tcggtggtgcacgccggcggcccggcgcaacgcgcggcctggctggccgcccacctgaat
gccctgcccgggtccggaatcgtgtacaccctgaccgtcgcgcaggccaacgacgtcgcc
gcgctgctgcgcgagcagggccacgccgtggccgcctacacgggaggaaccgaggccgcc
gaacgtgaacaactcgaggccgacctactggccaaccgggtcaaggcgctgatcgcgacg
tcggcgctggggatgggcttcgacaagcccgacctcggcttcgtcgtccacctcggggcg
ccgtcctcgccgatcgcctattaccaacaggtcggccgcgccgggcggtccaccgccagc
gcggaggtgatactgctgcccggccgcgaggacgccgacgtgtggcggtatttcgcatcg
gtggccttcccgccggaagccttggtgcgcaaagtgatcgacgccctcgagccggaccgc
gcgcagtccacggcggcactcgagccgctggtcgacctcaaccggtcccgcctggagatg
gtgctgaaggtgctcgacgtcgacggcgcggtgcggcgggtcaagggcgggtggatcagc
accgggcagccgtgggagtacgacgaggcccgctaccgccgcctcgacgaggcccgtaaa
cgcgagcagcaggcgatgctcgactaccagagcaccgacggttgccgcatgtcgttcctg
cgtagccaactcgacgaccccgaactcggtccgcaaccgtgcggtcggtgcgacaactgc
gcggggccgcggtacatcgccgacgtcgacgcggagcaagccgagacgacccggctgcgc
ctcatgcgaccgggggtcgagatcgccccgcgcaagcagtggccgaccggtctggccaag
ctcggcctggagatgtcgggccgcatcagcgacgggccttcgccgggccgtgcgatcggg
cggctgaccgacctcgggtggggcgcgcggttgcgcaagctgttggcagaccctgacgcc
gaggtgtccgacgacgtgctgggcgcggccgtcgcggtgctgaaggcctgggagtggcag
cagcgcccgacagcggtgctcgcgctggattcggcgacccgaccgaagctgatctcctcc
ctggcggcgcgcctggccgaggtgggtcgactggaaaaccttggcgtgctggagtattcg
cacgatcaccggcccacctccgccgcgaactcggcgtaccgggtggcggcgttgcacggc
gcctgggtcccgccgggcggggtggccggggcgcgcgtgctcctggtcgacgacctgacc
gacacggggtggaccatgacaatggccgccagggcggtgcgcgccgccggcgcggccgag
gtgctgccgttcgcgctggcagcgaccagctag
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