Mannheimia sp. USDA-ARS-USMARC-1261: X781_13770
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Entry
X781_13770 CDS
T03026
Name
(GenBank) Cold-shock DEAD box protein-A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mvr
Mannheimia sp. USDA-ARS-USMARC-1261
Pathway
mvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X781_13770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvr03019
]
X781_13770
03009 Ribosome biogenesis [BR:
mvr03009
]
X781_13770
Enzymes [BR:
mvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X781_13770
Messenger RNA biogenesis [BR:
mvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X781_13770
Ribosome biogenesis [BR:
mvr03009
]
Prokaryotic type
rRNA helicases
X781_13770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
AAA_22
tRNA-synt_1b
Motif
Other DBs
NCBI-ProteinID:
AHG73525
UniProt:
W0Q6N3
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All DBs
Position
1408157..1410034
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AA seq
625 aa
AA seq
DB search
MRQQEIAFIFCSLPFPTKWFFMTTESLTFADLGLPQSILDAVNDMGFVNPSPIQQECIPH
LLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAK
NLKGTRVVTIYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEAD
EMLRMGFIDDVETIMAELPEDHQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPD
IEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDM
TQQAREQTLEKLRSGRLDILVATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRA
GRSGRALLFVEPRERRLLRNIENLIKKPINEVAIPNHEVLMEKRREKFKARISKQLEHHD
LEKYRELLEDLFTADQDHEELAAAMMMLLQEKQKLILPPDPVVRAARSERGRDRNDRNDR
RTGREERQGSGMAMDLYRIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIE
LPQGMPKNLVQHFASKARVLSKPMQMSLLGPANSASNASPFDGGRGKGERRDRNDRGGRR
DGGFSKDRKGGFKEKRFSEKRGRRD
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcggcaacaggaaatagcctttattttctgttctctgccattcccaactaaatggttt
tttatgacaactgaatctttaacctttgccgacttaggcttacctcaatctattcttgat
gctgtgaacgatatgggctttgtaaacccttcaccaatccaacaagaatgtatccctcat
ttattagccggtcgagatgtgcttggaatggcacaaaccggaagtggaaaaacagcagcg
ttctctttacctctattagctcaaatcgatccaacacaacgccatccacaaatgttagtg
atggcacctactcgtgaattggcaatccaagtggctgatgcctgtgaacaatttgcgaaa
aatctcaaaggtactcgtgtagttactatttatggtggacaacgttacgacattcaactt
cgagcattaaaacaaggctcacaagtcgttgtaggaacgccagggcgtattcttgatcat
attcgtcgtggcacattggatttatctgaattgaaatttatcgtattagacgaagcggat
gaaatgctccgtatgggctttattgacgatgttgaaaccataatggctgaattaccggaa
gatcatcaaactgccctattctcagctacaatgccggaaccgattcgtcgtattacccgc
cgctttatgaaagatccgcaagaggtcaaaattaaagcgactgaacgctctgctccggat
atcgagcaaagttactggttagtaaacggtttccgcaaaaatgatgcgttattacgtttc
ttagaagtggaagagtttgatgcggcaattatctttacccgtaccaaaacaggcactatc
gacattaccgaattatgtgaacgtaacggctaccgtaccgctgccttaaacggcgatatg
actcaacaagcccgtgagcaaactttagaaaaacttcgttcaggtcgtttagacatttta
gttgcaactgatgttgctgctcgtggtattgatattgaacgcattagtttagttatcaac
tacgatattccacttgaagaagaatcttacgttcaccgtatcggtcgtaccggtcgtgcc
ggtcgttcaggtcgtgcattattatttgttgagcctcgtgaacgtcgtttattacgcaac
attgaaaacctaatcaaaaaaccgattaatgaagtggcaattccaaaccacgaagtatta
atggaaaaacgccgtgagaaattcaaagcccgtatttctaaacaattagaacatcacgat
ttagaaaaatatcgtgagttactggaagatttattcacagcagaccaagatcacgaagaa
ctagcagcagcaatgatgatgttattgcaagaaaaacaaaaactcattcttccaccggac
cctgtcgttcgtgccgctcgctcagaacgtggacgtgatcgtaatgacagaaacgaccgt
agaactggtcgtgaggaacgtcaaggtagcggtatggcaatggatttatatcgtatcgaa
cttggtcgtgaagatggagtggaagtacgccatatcgtaggtgcgattgcaaatgaaggc
gatatcagcagccgttatatcgggcatatcaagttacacgatacctactcgactattgaa
ttaccacaaggtatgccaaaaaatttagtgcaacactttgctagtaaagctcgtgtgtta
agtaaaccaatgcaaatgagcttattaggaccggcaaacagtgcaagcaatgctagcccg
tttgatggtggtcgtggcaaaggtgagcgtcgtgatcgcaatgatagaggcggtcgccgt
gatggcggttttagtaaagaccgtaaaggtggctttaaagaaaaacgctttagcgaaaag
cgtggtcgccgtgattaa
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