Mannheimia sp. USDA-ARS-USMARC-1261: X781_15260
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Entry
X781_15260 CDS
T03026
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mvr
Mannheimia sp. USDA-ARS-USMARC-1261
Brite
KEGG Orthology (KO) [BR:
mvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvr03019
]
X781_15260
Enzymes [BR:
mvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
X781_15260
Messenger RNA biogenesis [BR:
mvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
X781_15260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
T2SSE
AAA_23
ResIII
SLFN-g3_helicase
NACHT
SRP54
ABC_tran
DNA_ligase_A_N
AAA_30
RsgA_GTPase
HA2_N
AAA_24
PhoH
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AHG73673
UniProt:
W0Q8V4
LinkDB
All DBs
Position
1571402..1575316
Genome browser
AA seq
1304 aa
AA seq
DB search
MMKKNLRKNEENQPLVKLENITTSDFRRLLGRLKGAENIKNEANKRSVLDEILQDLTACQ
ARFFIRQTHAQNLKIDYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLEL
GRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKVRFNDQVSENSLVKLMTDGI
LLAEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERF
SKHFNNAPIIEVSGRTFPVEVRYRPIVEEEEQDQLQGILNAVDELQSEGRGDILIFMNGE
REIRDTAEALQKQELRHTEILPLYARLSATEQQRIFQPSGGLNRIILATNVAETSLTIPN
IKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICIRLYSEEDFNA
RPQFTDPEILRTNLASVILQMTSLGLSDIASFPFVDAPDSRQIQDGIRLLEELQAIIPNR
NGARLSTHKLTLIGKQLAQLPVDPRLGRMIIEASKNGSLHEVMMIVSALSIQDPRERPQE
KQQSADDKHRRFADKESDFLAFVNLWHFIQTQQKELSKNQFRNLCRKDYLNYNRVREWQD
IYHQLRLAVREMGLKINSEAATYQPIHTALLTGLLSHIGLKDNEKMHYLGARNAHFFIFP
NSVLFKKQPKWVMAAELVETTKLWGRMVARIEPEWIEPLAVHLTKSSYSEPHWAKSKGAV
MASEKVSLFGIPIVTNRPVNYGSIDPSVSREIFIRSALVEGEWHNNYKFFKENNRLIREV
EAMEHKSRRRDILVDEQVLFEFYDQRIGTEVVSAKHFDTWWKKASKSDPELLNFEKSFLI
NDNANLASELDFPNFWYQDNLKLKLSYQFEVGKDHDGVTVHIPLPLLNQVEPDGFDWQIP
GLRHELIVSLIKSLPKSLRRNFVPAPNYADAFLGRVEPFKKPLLESLSYELRRMTGVLVE
AEQWDISQLPPHLRMTFRVVDDKGKKLQESENLDELKFALKNEVQNTLSNIADDGIEQSG
VHIWNFAELPQFYEQKKAHFSVKAYPAIVDEQSAVGVKLFETEFEQARAMQAGLRRLLLL
NVPSPIKYLHEKLPNKAKLGLYFAPFGKVIELIDDCIACAVDKLIGEFGGFVWTEEKFNE
LHEYVRANLNDTTVDIAKQVEKCLTLAYELNKRLKGKLDFTMAFALSDIKAQIDGLIYPE
FVTKTGYQRLSDLHRYLTAIERRLDKLVVDSNTDRAKMLRIEQVQEVYKQLLSKLPKSKP
MPDEVQEIRYMIEELRVSLFAQQLGTKYPISDKRILNTINDLKK
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgatgaaaaagaatttgcgaaaaaatgaagaaaatcaaccgcttgtaaaactggaaaat
atcacaacgagcgattttcgtcgcctactcggcagattaaaaggagcagaaaatattaaa
aatgaagctaacaagcggtcagttttagacgaaattttgcaagatctaactgcttgccaa
gctcgcttttttatccgccaaacccacgcccaaaatctaaaaattgactatccggatctg
cctgtttccgctcgccgtgaggaaattttaaagctgattgctgaaaatcaagtggtcgta
attgctggtgaaaccggttcgggtaaaaccacccaattaccgaaaatgtgtttggaactc
ggacgaggcgtaaaaggattaatcggacatactcaaccccgcagaattgcagctcgatct
gtggcaacccgtattgctgaagagctgaaatcagagctgggggagactgtcggttacaaa
gtccgttttaacgatcaagtaagtgaaaacagcttagttaaactgatgacagacggtatt
ttgcttgccgaaattcaaaatgatcgttacttaaatcaatacgatacgctgattatcgac
gaagcccacgaacgttcgctgaacaacgatttcatcttgggctatttaaaacaaattctg
cataaacgccctgatctgaaagtaatcattacctcagccaccattgatgtagaacgcttt
tccaaacattttaacaatgcccctattattgaagtgtctgggcgaactttccctgttgaa
gttcgctaccgaccaattgtagaagaagaggagcaagaccaattacaaggtattttaaat
gccgttgatgagctacaatctgaaggaagaggcgatattctgatttttatgaatggcgaa
cgggaaatccgtgataccgccgaagctctacaaaagcaggagcttcgccataccgaaatt
ctgccactttacgctcgcttgtcagctacggagcaacaacgaattttccagccgagtggt
gggttaaaccgcattattttagccactaatgtagcggaaacctcactgacaatcccgaat
attaaatatgtaatcgacaccggcacggctcgtatttcccgctatagctatcgtaccaaa
gtacaacgcttaccgattgaaccgatttcccaagcttctgctaatcagcggaaagggcgt
tgtgggcgtatttcggaagggatctgcatccgtctctactcagaagaggatttcaacgct
cgtccgcaatttaccgatccggaaattttacgaaccaacctcgcgtctgtaattttgcaa
atgacctcgctcgggctgagtgatattgcatctttcccatttgtcgatgcacctgatagc
cgtcaaattcaagatgggattaggttgttggaagagttgcaagcaattattcctaaccga
aacggagctcgcctgtctacacataaattgacactaatcggtaaacagctcgctcaacta
cctgtcgatcctcgtttaggcagaatgattattgaggcatcgaaaaacggttcattgcac
gaagtaatgatgatcgtttccgctctctctatccaagatccgagagaacgcccacaggag
aaacagcagtccgcagacgataaacatcgccgctttgccgataaagagagcgatttcttg
gcatttgtaaacctttggcatttcattcaaacgcaacaaaaagagttatcgaaaaatcaa
ttccgcaatctctgccgtaaggattatttaaactataatcgtgtgcgggaatggcaggat
atttaccaccaactccgtctagccgtgcgtgaaatggggctaaaaattaacagtgaagct
gccacttatcagccgattcatactgcccttctcacagggctactctcgcatatcggtttg
aaagataatgagaaaatgcactatttaggggcaagaaatgctcacttcttcattttcccg
aattccgtgcttttcaaaaagcagccgaaatgggtaatggcagcagaactggtagaaacc
accaaactttggggacgaatggttgctcgcattgagccggaatggattgaaccattggca
gtacatttaaccaaatccagttacagcgagccacactgggcgaagtccaaaggagcggtg
atggcatctgaaaaagtgtcgctatttggcattccaattgtaacaaatcgccctgttaat
tatggctcgattgacccaagcgtcagccgtgaaatttttatccgctcagcactggtggaa
ggtgaatggcataataattacaaattttttaaagaaaataaccgcttgatccgcgaagta
gaggcaatggagcataaatcccgccgccgtgatattttagtggacgagcaggtattattc
gagttttatgatcaacgaataggtacagaggtggtgtccgccaaacactttgatacttgg
tggaaaaaggcttcgaaaagcgatcctgagctactgaactttgaaaaatcgttcttgatt
aacgataatgctaacttggcgagcgagctggatttcccgaatttctggtatcaagataat
cttaaattaaaactcagctatcaatttgaagtgggtaaagatcacgatggcgtaacggtg
catattccattgccattactcaaccaagtcgagcctgatggtttcgactggcaaattccg
gggcttcgccacgagttaattgtttctttgatcaaaagtctaccaaagtcattacgccgc
aactttgtgcctgctcctaactatgctgatgcctttttagggcgggttgagccgtttaaa
aaaccattattggaaagtttaagctatgaacttcgtcgaatgaccggcgtgttagttgag
gctgaacagtgggacatcagccagctaccgccgcatttgcgaatgaccttccgtgtggta
gacgacaaaggcaaaaaattacaagagagcgagaatttagacgagctgaaatttgctctc
aaaaatgaagtacagaatacgctttcaaatatcgctgatgacggcattgagcaaagcggt
gtgcatatttggaattttgccgagttaccgcaattctacgaacagaagaaagcccatttc
agtgtgaaagcctaccctgcgattgtcgatgaacagagtgcagtaggcgtgaaactattt
gaaacggaatttgaacaggctcgggcaatgcaggctgggttacgccgtttattgttgctc
aatgtgccttcaccaatcaaatatctacacgaaaaactaccaaataaagctaagctcggc
ttatattttgctccattcggcaaagtgatagaactgattgacgactgtatcgcctgtgca
gtggataagttgattggggaattcggcggttttgtatggactgaggagaaattcaacgaa
ctgcacgaatatgtacgagcaaatcttaatgataccactgttgatattgcaaaacaggtt
gaaaaatgtttaacgttggcgtatgagctgaataaacgcctaaaaggcaaattggatttc
acaatggcatttgcgttaagtgatattaaagcccaaattgatggattgatttatccggaa
tttgtaaccaaaaccggctatcaaagattaagcgatttacaccgctatttaaccgccatt
gaacgccgtttagataaactggtagttgatagcaatactgaccgagccaaaatgttacgc
atcgaacaagtccaagaagtctataagcaacttttaagcaaactgccaaaatctaagcca
atgcctgatgaagtgcaggaaattcgatatatgatcgaggaactacgggtcagcctattt
gctcaacagcttggtacaaagtatccgatttctgataagagaattttaaatacaattaat
gatctaaaaaaataa
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