Moritella viscosa: MVIS_0220
Help
Entry
MVIS_0220 CDS
T03770
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mvs
Moritella viscosa
Pathway
mvs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MVIS_0220 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvs03021
]
MVIS_0220 (rpoC)
03400 DNA repair and recombination proteins [BR:
mvs03400
]
MVIS_0220 (rpoC)
Enzymes [BR:
mvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MVIS_0220 (rpoC)
Transcription machinery [BR:
mvs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MVIS_0220 (rpoC)
DNA repair and recombination proteins [BR:
mvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MVIS_0220 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CED58255
LinkDB
All DBs
Position
1:254793..259076
Genome browser
AA seq
1427 aa
AA seq
DB search
MKDLLKFLKQQGKTEEFDGIKIGLASPEQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFESYVVIEPGMTSLERGMMLTEEQYLDNLEEWGDEFDAKM
GAEAVLSLLQDLNLSQDIEEMREELETTNSETKRKKITKRLKLMEAFAVSGNKPEWMIMN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLESLGFATTIKAAKKMVEREGAEVWDILDGVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAYNADFDGDQMAVHVPLTIEAQLEA
RTLMMSTNNILSPANGEPVIVPSQDVVLGLYYMTRSGVAAKGEGMVLGSPEEAEKLYRSH
LVELHARVKVRITEHLKDEDTGEVTVRTELKNTTVGRAILSLVAPKGLPYELIDPAKTLS
AEEEAKLEANPANWILKVSNEALGKKQISKLLNDCYRLLGLKDTVVFADQLMYTGFHYAA
LSGASVGIDDMVIPDAKKTLIDEAEVEVTQIQEQFQSGLVTAGERYNKVIDIWARANEHI
SKAMMDNLSTETKVNSLGDTETQKSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS
IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVINEID
CGTENGLIITPHIEGGDVVEPLRDRVLGRVVAEDVLKPGSDEVLLPRNTLLDEKLCDFLE
EHSVDQMKVRSVITCDNDFGVCAACYGRDLARGVMVGQGEAVGVVAAQSIGEPGTQLTMR
TFHIGGAASRASAENNIQVKNTGTIKFHNEKFVENADGKLVITSRSSEITIIDENGRTKE
SHKLPYGSVVEYKDGAAVESGSIIANWDPHTHPIITEVAGQIKFVDLIDSITVTKQTDDL
TGLSSTVILDPAARVAAGKDLRPMVKLVDAAGNDLFIPGTEVIAQYFLPSNAIVNLEDGA
LVTIGEALARIPQESSKTRDITGGLPRVADLFEARQPKDAAILAEISGTISFGKETKGKR
RLVITPTDGAEAYEEMIPKWRHLNVFEGEKVAKGEVIADGPESAHDILRLRGISHVANYI
ANEVQEVYRLQGVKINDKHIETIVRQMLRKANVISAGDSNFLPGEQAEVSRLKIANRQLE
AEGKQPAVFQHMLMGITKASLATESFISAASFQETTRVLTDAAVHGKIDDLRGLKENVIV
GRLIPAGTGFSYHQERAKKRAGKVEEVMQEITTDEAEQNLANLLNNL
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaaacagcaaggtaagaccgaagagttcgatggtatc
aagattggtctagcttctccggaacagatccgttcttggtcttttggtgaagttaaaaag
ccagaaaccatcaactaccgtaccttcaaacctgagcgtgacggtttattctgtgcgcgt
attttcggcccagtaaaagattacgaatgtctttgcggaaaatataagcgtctgaagcac
cgtggtgttatctgtgaaaaatgtggcgtagaagtaacgcaaactaaagttcgtcgtgac
cgtatgggccacatcgaattagcgtctcctgttgcacacatttggttcttgaaatcatta
ccatctcgcatcggtctattactagacatgacgctacgtgatatcgaacgtattctttac
ttcgaatcatatgttgttatcgaacctggtatgacttcgctagagcgtggcatgatgctg
actgaagagcagtatcttgacaacctagaagaatggggtgatgaatttgatgcgaagatg
ggtgcagaagctgtactttctttgttacaagatctaaacctaagccaagacattgaagaa
atgcgtgaagaattagagactacaaactctgaaactaaacgtaagaagatcactaaacgt
cttaaactaatggaagcattcgctgtatctggtaacaaaccagagtggatgatcatgaac
gtactgccggtattaccgccagatcttcgtccattagttccactagatggtggccgtttt
gcgacttctgatctaaatgacctttaccgtcgtgtgatcaaccgtaataaccgtctaaaa
cgcctattagatctagctgcaccagatatcatcgtacgtaatgaaaaacgtatgttacaa
gaatctgttgatgcactattagataatggtcgtcgtggtcgtgcgattacaggttctaac
aaacgtcctcttaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aatctacttggtaaacgtgtggattactctggtcgttctgtaattacagttggaccaacg
ctacgcttacaccaatgtggtctacctaagaaaatggcacttgagctattcaagccattc
atctacggtaaattagaatcacttggttttgctacaacgattaaagcagctaagaaaatg
gttgaacgcgaaggcgctgaagtttgggatatcctagacggcgtgatccgcgaacatcca
gtaatgcttaaccgtgcaccaactcttcatagacttggtattcaagcattcgaacctgtt
ctaattgaaggtaaagcgattcagttacacccattagtatgttctgcatacaacgccgat
ttcgatggcgatcagatggctgtacacgtaccgttaacaattgaagctcaattggaagcg
cgtacactgatgatgtctacgaataacattctttcacctgcgaatggtgaaccggttatc
gtaccttctcaagacgttgtattaggtctttactacatgactcgttctggcgttgctgct
aagggtgaaggcatggtattaggtagccctgaagaagctgaaaagctttatcgcagccac
cttgttgagctacatgcacgtgttaaagtacgtattactgaacatcttaaagatgaagac
actggtgaagttacagttcgcactgaactgaaaaacacaacagttggtcgtgcgatcctt
tcgttagtagcacctaaaggtctaccatatgaattaatcgatccggctaaaactttatct
gctgaagaagaagcgaaacttgaagcgaatccagctaactggatcctgaaagtatctaac
gaagcgttaggtaaaaagcagatctctaagctactgaatgactgttaccgtctattaggt
ctgaaagatactgttgttttcgctgatcaactaatgtacaccggtttccattacgctgca
ctttctggtgcatctgttggtatcgatgacatggttattcctgacgcgaagaaaacgcta
attgatgaagctgaagttgaagtaactcaaattcaagagcaattccaatcaggtcttgtt
actgcgggtgagcgttacaataaagttattgatatttgggcgcgtgccaatgagcatatc
tcaaaagcaatgatggataacttgtctacagaaactaaagttaactctttaggtgatact
gagacacagaaatctttcaacagcatttacatgatggccgattctggtgctcgtggtagt
gcggcacagattcgtcagctagctggtatgcgtggtctgatggcgaaaccggatggttca
attattgaaacaccgattaccgctaacttccgtgaaggtctaaacgtacttcagtacttc
atctcaacgcatggtgcgcgtaaaggtctagccgatacagcacttaaaacagcaaactcg
ggttacctaactcgtcgtcttgttgacgttgcacaagatcttgtaattaacgagattgat
tgtggtactgaaaatggtctaatcattactcctcatattgaaggtggtgatgttgttgaa
ccattacgcgatcgtgttcttggtcgtgttgttgctgaagatgtattaaaacctggttct
gacgaagttctattaccacgtaatacattacttgatgaaaaactttgtgatttcttagaa
gagcactcagttgatcaaatgaaagtacgctctgtaattacttgtgacaatgacttcggt
gtttgtgcagcttgttacggtcgtgatttagcacgtggtgttatggttggtcaaggtgaa
gcagttggtgttgttgcagcacaatcaattggtgaacctggtacacagttaacgatgcgt
acattccacattggtggtgcggcatcgagagcctctgcagaaaataatatccaagtgaaa
aacacgggtactattaagttccataacgaaaaattcgttgagaacgcagatggcaaactg
gttattacttcacgttcatcagaaattacgattattgatgaaaacggtcgtactaaagaa
agccataaattaccttacggttctgttgttgaatataaagacggcgcagctgttgagtct
ggtagcattattgctaactgggacccgcatactcacccaatcatcaccgaggtggcaggt
caaattaagtttgttgacttaattgatagtatcacggttactaagcaaactgatgatcta
actggtctatctagcacggtaattctggatcctgcagcacgtgttgccgctggtaaagat
ttacgtcctatggttaaacttgttgatgcagcaggtaatgatttattcattcctggtaca
gaagttattgcacaatacttcttaccttcaaatgcaatcgttaacttagaagatggcgca
ttagtgactattggtgaagcgttagcgcgtattcctcaagaaagctcgaaaacacgtgat
attacgggtggtctaccacgcgtagcggatctgtttgaagctcgtcagccaaaagatgct
gctattttagcggaaatctcaggtactattagtttcggtaaagaaactaaaggtaaacgt
cgtctagttatcacacctactgatggtgctgaagcttacgaagagatgatccctaaatgg
cgtcacttgaacgtgttcgaaggtgagaaggttgctaaaggtgaagttatcgccgatggt
cctgaatcagcacacgatattctacgtctacgtggtattagccatgttgcgaactatatc
gcgaacgaagttcaagaagtataccgtttacaaggcgtaaagattaacgataagcacatt
gaaactatcgttcgtcaaatgctacgtaaagctaacgtaatctctgctggtgatagtaac
ttcttaccaggtgagcaagctgaagtttcacgtctgaaaattgctaaccgtcagctagaa
gctgaaggcaagcaaccagccgtgttccaacacatgcttatgggtattactaaagcgtct
cttgcaactgaatcatttatctcagctgcatcgttccaagaaacaacacgtgttctaaca
gacgctgctgttcatggtaagattgatgaccttcgtggtctgaaagagaacgttatcgtt
ggtcgtctgatccctgcaggtacaggcttctcttatcaccaagaacgtgcgaaaaaacgt
gctggtaaagtagaagaagtaatgcaagaaatcactactgatgaagctgaacagaactta
gcaaacctactaaataacctttaa
DBGET
integrated database retrieval system
