Mammaliicoccus vitulinus: I6J10_11645
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Entry
I6J10_11645 CDS
T07207
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mvt
Mammaliicoccus vitulinus
Pathway
mvt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mvt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6J10_11645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvt03400
]
I6J10_11645 (mfd)
Enzymes [BR:
mvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6J10_11645 (mfd)
DNA repair and recombination proteins [BR:
mvt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6J10_11645 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QQT15190
LinkDB
All DBs
Position
2351426..2354935
Genome browser
AA seq
1169 aa
AA seq
DB search
MKHVIHEIIQADERFQDLEHIFGDKNILITGLNQSSKALLILEQYLKNDKQLVIVTNNLY
QADKLEADILQLLPSEEVFKFPVQDIMIEAFSTQSPDLMSERIRTLTHLAQGKKGLFIVP
INGLKKQLTPKNIWNGHYKSIKIGDDIDLDEWAKQLVDMGYKRQSLVSAIGEFSIRGGLI
DIYPVTADPVRIELFDTEVDGMRLFDVETQRSLGNVEQVEITTASDYIFTSEQINQLSER
MEDSYEKTRQKLPTEMRADLKDTYQNILMQSDELKEHQILRRVIAFMYDEVTTFTDYLAE
DALIVVDEYNRIKETENALDVEIEEFTQSLVESGQGFIGQRFIAENAFTDLLNQHKVAYF
TLFTASMPVEIEEMVKFSCKPVQRFYGQYDIMQSEFDRFMKQGFTVVLLAESETRKSKIQ
GMLTDMKIPTVIDRVEQVGERGQAVVTDGALSEGFELPYMKLVVVTEKELFKARERKQSK
RRQKLSNAEKIKSYQELNVGDYVVHVHHGVGKYLGVETLEVSGIHKDYIKIQYKGTDQLF
VPVDQMNDVQKFVGSDDKVPKVNKLGGTEWKKTKAKVQKNVEDIADELLKLYQEREQVEG
YQYGPDNEEQMTFEMDFPYEPTPDQVTSLEEIKADMEKRRPMDRLLCGDVGYGKTEVAIR
AAFKAVLEGKQVAILVPTTILAQQHFETFRERMQEYPVEIQMMSRFRTPKQVKETKEGIK
SGFVDIVVGTHKLLSKDVEYKDLGLLVVDEEQRFGVKHKERIKALKTNVDVLTLTATPIP
RTLHMSLLGVRDLSVIETPPENRFPVQTYVLEQNMNFVKEALEREVSRGGQAFYLYNRVQ
SIYQKSEQLSMLMPNARIGVAHGQMSERELEETMLNFVGGEYDILVTTTIIETGVDVPNA
NTLIIEDANRFGLSQLYQLRGRVGRSSRIGYAYFLHEQNKVLTEVAEQRLQTIKEFTELG
SGFKIAMRDLNIRGAGNLLGSQQHGFIDSVGYDLYSQMLEEAVNVKRGIEPESEVPQLEV
DIKIDAYIPAEYIKNEQAKIEMYKKLRSIATHSQLEDIKDELMDRFGEYPVEVQRLLDVV
EIRLNGLHFGITEIKEVAKTIQLTASEYTTNHLKGDVLFKVTEPLGRKLKIAVADNRMVF
KLQKTKQWMDDLKFLTKVINESLVDDDTI
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatgttattcatgaaatcatacaagcagatgaacgatttcaagatttagaacat
atttttggtgacaaaaacatactgattactggattgaatcaatcgagtaaagcattgctt
attttagaacaataccttaaaaatgataagcaattagttattgtgacaaacaacttgtat
caggcggataaattagaagcagatatcctgcaattactaccttcagaagaagtatttaag
ttccctgtgcaagatattatgatagaagcattttcaacacaaagtccagatttaatgagt
gaaagaattagaacattaacccatcttgcacaaggcaagaagggtctatttatcgtgcct
attaatggtttgaaaaagcaattaacgccaaaaaatatttggaatggacactacaaatct
attaaaattggtgacgatattgatttagatgagtgggctaaacaactagttgatatgggt
tataagagacaatcattagtttcggcaattggtgaattttctattcgtggtggcttaatt
gacatttatccagtaacagctgacccagttcgtattgagttatttgatacggaagtcgat
ggtatgaggttgtttgatgtcgaaacacaacgttctttagggaatgttgaacaagttgaa
attacaactgcaagtgattatattttcacaagtgaacaaatcaatcaactatcagaacgt
atggaagattcatatgaaaaaactcgacaaaaattaccgactgaaatgcgtgcagattta
aaagatacatatcaaaatattttgatgcaaagtgatgaattgaaagaacatcaaattttg
agacgtgttatagcgtttatgtatgatgaggttacaacttttacagattatttagctgaa
gatgcactgattgttgtagatgaatataatcgaatcaaggaaacagagaatgctttagat
gttgaaattgaagagtttacacaatctcttgttgaatcgggtcaaggttttataggacaa
cgcttcattgctgagaatgcttttactgatttattgaatcagcataaagttgcttatttc
actttatttacagcaagtatgccagttgaaatcgaagagatggttaagttttcatgtaaa
ccagttcaaaggttttacggacagtatgacattatgcaatcagaatttgaccgatttatg
aaacaaggatttacagttgttctattggctgaatctgaaacgagaaagtctaaaattcaa
ggtatgttaactgatatgaagataccaacagtaatcgatagggtagaacaagttggtgaa
agaggtcaagctgttgtaacggacggtgctttatcagaaggattcgaactgccttatatg
aaattggttgttgtcacggaaaaagaattattcaaagcgcgtgaacgtaaacaatctaaa
agaagacaaaaattatctaatgcagaaaaaataaaatcataccaagagcttaatgttgga
gattacgttgtacatgttcatcacggtgtcggtaaatacttaggtgttgaaactttagaa
gtttctggtatacacaaagattatattaaaattcagtataaaggtacggatcaattattt
gtgcctgttgaccaaatgaatgatgttcaaaaatttgttggttcagatgataaagtacca
aaagttaataaacttggtggtactgagtggaagaaaactaaagcgaaagtacaaaaaaat
gttgaagatattgcagatgaattgttaaagctatatcaagagcgcgagcaagttgaagga
tatcaatatggtcctgataacgaagaacaaatgacatttgaaatggactttccttatgaa
cctacacctgaccaagtgacttctttagaagaaatcaaagcagatatggaaaaaagaaga
ccgatggatagactgctatgtggcgatgtaggttacggtaagactgaagtagctattcga
gctgcatttaaagctgtcttagaaggcaagcaagttgccatactagtgccgaccacaatc
cttgcacagcaacactttgaaacatttagagaacgtatgcaagaatatcctgtagaaata
caaatgatgagtcgatttagaacgccaaaacaagtaaaagaaactaaagaaggcattaaa
tcaggctttgtagatattgttgtaggtacgcataaactgttaagtaaagatgtagaatat
aaagatttaggactgttggttgttgatgaagagcaaagatttggtgtgaaacataaagaa
cgaataaaagcattaaaaacaaatgtagatgtgctgacattaacagcaacacctataccg
agaacgcttcatatgagcttattaggtgtaagagatttatcagtaattgaaacgccacct
gaaaatagatttccagttcagacatatgtgttagagcaaaatatgaactttgtaaaagaa
gcacttgagcgagaggtttcaagaggcgggcaagctttctatttgtacaacagagtgcag
tctatctatcaaaagagcgaacagttatccatgttaatgccgaacgcaagaataggtgtt
gcacatggacaaatgtcagaacgtgaactagaagaaacaatgctgaattttgtaggtgga
gaatatgatattcttgttacgacaacgattatcgaaacaggtgtagacgttccgaatgct
aatacactaattatagaagatgcaaatagattcggactaagtcagttgtatcaattacga
ggaagagttggccgttcgagtcgaattggctatgcatattttctacatgaacaaaataaa
gtgttaacagaagttgcggaacaaaggctacaaaccattaaagagtttactgaattaggt
tctggctttaaaattgcaatgcgagatttgaatattcgtggcgcaggtaacctcttaggt
agtcaacaacacggatttatagattctgtaggttacgacttgtattctcaaatgttagaa
gaagcagttaatgtgaagcgaggtattgaacctgaatctgaagtaccgcaattagaagtc
gatattaaaatagacgcatatattccagctgaatatatcaaaaatgaacaagctaaaatt
gaaatgtataaaaaattaagatctatcgcgacacatagtcagcttgaagatataaaagat
gaattaatggatcgttttggagaatatccagtagaagtgcaacgattattagacgttgtc
gaaattaggttgaatggtcttcatttcggtattacagaaattaaagaagtcgctaaaaca
atacaattaacagcatctgaatatacgactaatcatttaaaaggtgatgtactattcaaa
gtgactgaacctctaggtagaaagttgaaaatagcagtagcagataatcgaatggtattt
aaattacaaaaaacgaagcaatggatggatgatttaaaattcttaactaaagtgataaac
gaaagtttggtagacgatgacacaatctaa
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