Methanocaldococcus vulcanius: Metvu_0249
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Entry
Metvu_0249 CDS
T01105
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mvu
Methanocaldococcus vulcanius
Pathway
mvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metvu_0249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvu03019
]
Metvu_0249
03009 Ribosome biogenesis [BR:
mvu03009
]
Metvu_0249
Enzymes [BR:
mvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Metvu_0249
Messenger RNA biogenesis [BR:
mvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Metvu_0249
Ribosome biogenesis [BR:
mvu03009
]
Prokaryotic type
rRNA helicases
Metvu_0249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
DUF4187
Motif
Other DBs
NCBI-ProteinID:
ACX72116
UniProt:
C9REW4
LinkDB
All DBs
Position
complement(240877..242091)
Genome browser
AA seq
404 aa
AA seq
DB search
MDVKYMNFEELNLSENTLNAVRNKGFEKPTDIQTKVIPLFLNGEKNIVAQARTGSGKTAS
FALPLIELINEGEGIKAIILTPTRELAIQVADEINSLKGNKNLKIVKVYGGTPIQPQIKY
LKNANIVVGTPGRVLDHINRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKNRR
ILLFSATMPVEILNLAKKYMNDYEFVRAKRNADIEQTFIEVDENKRFETLCRILRDRNFY
GLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLKQHQREKVVRLFKQKRIKILIATDVMSR
GIDVNDLSHVVNYHLPQTPEAYMHRIGRTGRAGKKGKAISIINRKEYRKLKHIERTMKLK
IKKYNTKNYNAKNIKSMKNEKKMNQFKEHKSKNEMKKLEKTEIN
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
ttggatgtgaaatatatgaattttgaggaattaaatttatcggagaatactttaaacgca
gtaagaaacaagggctttgaaaaaccaacagatattcaaactaaggttattcccttattt
ttaaatggagaaaagaatattgttgctcaggcaagaactgggagtggaaaaacggcctct
tttgcccttccactgattgaactgatcaacgaaggggaggggataaaggcaattatctta
actccaacaagagagttagccatacaagtggctgatgagataaactcattaaaagggaat
aaaaatttaaaaatagtaaaagtttatggaggaactccaatacaaccccaaataaaatat
ctaaaaaatgccaacatagtggttggaactccggggagggtattggatcatataaacaga
ggaacattgaatttgaaagatgttgaatattttatacttgatgaagcagatgaaatgctt
aatatgggatttatagatgatgttgagaaaatattaaatgcatgtaataaaaataggaga
atcttgctgttctctgcaacaatgccagtagagatattaaatttggccaaaaaatacatg
aacgattatgaatttgtgagggctaagagaaatgccgatattgagcagacctttattgag
gtagatgaaaataagcgattcgaaacattatgtagaattttaagagatagaaacttttat
gggcttgttttttgtaaaaccaaaaaggatacaaaagatcttgcaaatatgttgagagat
attggttttaaagcaggagcgattcatggagatcttaaacagcatcaaagagaaaaagtt
gttaggttgtttaagcagaagaggataaaaatactgattgcaacagatgtgatgagtagg
ggtattgatgttaacgatctaagccatgttgttaactaccatcttcctcaaaccccggaa
gcgtatatgcatagaattggaagaacaggacgagctggaaaaaaaggaaaagcaatttca
ataataaacagaaaagaatatagaaaactcaaacatattgaaagaacaatgaaattaaaa
attaaaaaatataatacgaaaaattataacgcaaaaaatataaaaagcatgaaaaatgaa
aaaaagatgaatcagtttaaagagcataagtcaaaaaatgaaatgaaaaaattagaaaaa
acagagataaattaa
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