Methanocaldococcus vulcanius: Metvu_1561
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Entry
Metvu_1561 CDS
T01105
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mvu
Methanocaldococcus vulcanius
Brite
KEGG Orthology (KO) [BR:
mvu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mvu03016
]
Metvu_1561
Enzymes [BR:
mvu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Metvu_1561
Transfer RNA biogenesis [BR:
mvu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Metvu_1561
Prokaryotic type
tRNA splicing ligases
Metvu_1561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Intein_splicing
LAGLIDADG_3
PP-binding_2
K1-lyase_N
Motif
Other DBs
NCBI-ProteinID:
ACX73414
UniProt:
C9RDN5
LinkDB
All DBs
Position
complement(1578950..1581874)
Genome browser
AA seq
974 aa
AA seq
DB search
MKDRLKKVSDVVWELPKDYKDCMRVPGRIYLNEILLDELEPEVLEQIANVACLPGIYKYS
IAMPDVHYGYGFCLHPNARVLTEHGFYYRIKDYEGLKDEKVDIFNTEDKKIEASEVKKFF
KLKPYCKIYKVRTKLGYETIATEDHPFYTPNGMVELKNLKVNDRVAIYPYEGVEYEEPTD
DIIIDENDIIKCMDELNLSKKSKEIILRKLKERSLIPLTYNHKKLPYLLKIMGFIFGDGS
INFIGKRGDGIIHFSSKHREDLERIREDIKKIGYTPSRVYKRENSCHFFYVNSSSLVVLL
HALGVPLGNKTLKKYNFPEWVFNCKLWQKRLFLSSLFGAELRKPYLRKDRKALFTFPTLE
IFKNIKIKEDALRFLENIAKLLNEFGVEATITKRNSTHKRTDGIGTVRYVLTIIGTSKNL
INLWAKIGYEYNRERQELGCYAVAFLKYREKEINRRKALVEKVKELFNEGKKPSEIIRLL
NINKEDERFVKDIWNKLKNGKEIKEIRVPSNFPSYEEFIKERKIGDGLIWDEIESIDEVD
DIDEVYDFTINHKDHNFIADSFLVSNCIGGVAAFDQREGVISPGGVGFDVNCGVRLIKTN
LTKEEVQPKIKELIKTLFKNVPSGLGSKGILKFSKGVMDDVLEEGVRWAVKEGYGWKEDL
EFIEENGCMEDADASYVSDKAKERGRVQLGSLGSGNHFLEVQYVEKVFDEEAAEIYGIEE
NQVVVLVHTGSRGLGHQICTDYLRIMEKAAKNYGIKLPDRQLACAPFESEEGQSYFKAMC
CGANYAWANRQMITHWVRESFEEVFKIHAEDLEMSIVYDVAHNIAKKEEHTIDGRKVKVI
VHRKGATRAFPPKHPQIPKEYKDVGQPVIIPGDMGTASYLMRGTEIAMKETFGSTAHGAG
RKLSRAKALKLWKGKEIQKRLAEMGIIAMSDSKAVMAEEAPEAYKSVDLVADTCHRAGIS
LKVARMRPLGVIKG
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagattaaaaaaggtctctgatgttgtctgggaattacctaaagattataaa
gattgcatgagagttccgggaaggatatacttaaatgaaatcctattggatgagttagaa
ccagaggttttggagcaaatagcgaacgttgcatgcttgccgggaatttataagtattcc
atagctatgcctgatgtgcattacggctatggcttttgtctccacccaaatgcaagggtt
ttaactgaacacggcttttattatagaataaaagattatgagggtttaaaagatgaaaaa
gtggatatatttaacacagaagataagaaaatagaagcaagtgaagttaaaaagttcttt
aaattaaagccatactgcaaaatctataaagttagaacaaaacttggatatgaaacgata
gcaacagaagatcatccattttatacaccaaacggaatggttgagcttaaaaacttaaaa
gtaaatgatagagtcgctatctatccttatgaaggagttgaatatgaagagccaacagat
gatataataatagatgaaaatgatataattaaatgtatggatgagttgaatctaagcaaa
aagagtaaagaaatcatcttaagaaaactaaaagaaagaagtttgattccattaacatac
aatcataaaaaactaccttacttgttaaaaattatgggatttatctttggagatggttca
attaactttattggaaaaagaggagatggtattatacacttttcctcaaaacatagagaa
gatttagagaggattagggaagacattaaaaagattggttatactccttcaagagtttat
aaaagggaaaatagctgccacttcttctatgtaaattcatcaagtttagttgtcttactg
catgcattgggtgttccacttggaaacaagacgttaaagaagtataacttcccagaatgg
gtatttaactgtaaattatggcagaaaagattgttcttatcatcactatttggagctgag
ctaagaaaaccatatctaagaaaggatagaaaggcattatttacattcccaacattagag
atatttaaaaatataaagattaaagaagatgcattaagatttttggaaaatattgctaaa
ctactaaatgaatttggtgtagaggcaacaattacaaaaagaaactcaactcacaaaaga
actgatggaattgggacagttagatatgttttaacaataattggcacatctaagaactta
ataaacttatgggcaaagattggttatgaatacaacagagagaggcaagaactcggatgc
tatgcagtggcatttttaaagtatagggaaaaagagataaatagaagaaaagcacttgtt
gaaaaggtaaaagagttgtttaatgagggtaaaaaaccatcagagattataagattgcta
aatataaacaaagaagatgaaagattcgttaaagatatttggaataagttaaagaatgga
aaagaaattaaagaaataagagtcccttcaaacttcccaagctatgaagaatttatcaaa
gaaagaaaaattggagatggattaatttgggatgaaattgaaagtatagatgaagttgat
gatatagatgaggtttatgattttacaataaatcacaaagaccacaactttatagcagat
agctttttagtttcaaactgtatcggaggagtagcggcttttgaccagagagagggagtt
ataagccctggaggtgtgggttttgacgtgaattgcggagttcggctcataaaaacaaat
ttaacaaaagaagaagtccaaccaaagataaaagagcttataaaaaccttattcaaaaat
gtcccttctggtttgggaagtaaaggaattttaaagttcagcaagggagttatggatgat
gtgttagaagaaggagttagatgggcagttaaagagggctatggatggaaggaggacttg
gagtttattgaagaaaatggatgtatggaggatgcagacgcttcctatgtctcagataaa
gcaaaagagaggggaagagttcaacttggtagcttgggaagtggaaaccacttcttagaa
gtgcagtatgttgaaaaggtatttgatgaggaagctgctgaaatatatggaatagaggag
aatcaagttgttgttttagtgcataccggttcaagaggtttaggacatcaaatctgcacc
gactatttaagaattatggaaaaagcagctaagaattatggaataaaattgccagataga
caattagcatgtgctccatttgaatcagaggaggggcagagttacttcaaggcaatgtgt
tgtggagcaaactatgcatgggcaaatagacagatgattacacactgggttagagagagt
tttgaagaagtgtttaaaatacatgctgaggatttagagatgagtattgtctatgatgta
gcccataacatagctaagaaagaggaacacacaatagatggaagaaaggtaaaagttata
gttcataggaagggagctacaagggcatttccaccaaaacatccacaaataccaaaagaa
tataaagatgttggacagccagttatcattcccggggatatgggaactgcctcatattta
atgagagggacagagattgctatgaaagagacgtttggttcaactgctcatggagcagga
agaaagctaagtagggctaaggcattaaaattatggaagggtaaagagatacagaaaaga
ttggcagagatgggaattatagcaatgagtgattcgaaggcagttatggcagaggaagca
ccagaagcatataagagtgttgatttagttgcagatacatgccatagagctggaatatca
ttaaaagttgcaaggatgagaccattaggagttattaaaggttaa
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