Microbacterium wangchenii: E4K62_02585
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Entry
E4K62_02585 CDS
T06490
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mwa
Microbacterium wangchenii
Pathway
mwa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mwa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E4K62_02585 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mwa03021
]
E4K62_02585 (rpoC)
03400 DNA repair and recombination proteins [BR:
mwa03400
]
E4K62_02585 (rpoC)
Enzymes [BR:
mwa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E4K62_02585 (rpoC)
Transcription machinery [BR:
mwa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E4K62_02585 (rpoC)
DNA repair and recombination proteins [BR:
mwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E4K62_02585 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
Motif
Other DBs
NCBI-ProteinID:
QBR87682
LinkDB
All DBs
Position
536134..540009
Genome browser
AA seq
1291 aa
AA seq
DB search
MLESTTFDQLRIGLATADDIRRWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHRDLPTQENNIRLELKTLGDRRDSKIAARLAKLEEE
LAALEAEGAKADQKKKVKDAAEKEMSQIRKGADEQIAKLERVWEDFRTLEVGTLKPEDDV
FHELQDRFGQYFEAHMGAESIKRRLEAFDLQAEAENLRLQISEGKGQRKIRAIKRLKVVS
SFLQTGMSPASMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTLKEGATGEGR
VFGSVGEAILAKDEGTLDLQAKVRIRIPGLSFLEGQAPEGYERHGLVDTSLGQAIFNDTL
PKGYPFVREQADKGKLSQIVNKLAEEYPKVEVAATLDRIKDAGFYWATRSGVTVALSDIL
TPPNKKEIVAGYEKQAAKVQAQYEKGLTTDAERRQELIKIWTEATDEVQKAMRDNFPEDN
TINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTSKGLELPIAAAGADGTLVKDANVE
NSVFARTLSSDVVDAQGTVLAEAGDDVGDVLINKLVEAGVENIKVRSVLTCDSAVGVCAK
CYGRSLATGKMVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASAEDITQGLPRVQELF
EARTPKGASPIAEADGRIVIDETDKAKKVILTPDNGDEPVVYPVLKRATLLVEDGQHVSV
GQPLLVGTLDPKEVMRVQGAREVQKYLVNGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTTLLPGELVDFKKYQNINRETVAEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVTVEATEEAKSERYPNRI
FASDGAYSDADLSYVDFDSFSTDDFTPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaatcaaccactttcgatcagcttcgcatcggcctggctacggctgacgacatc
cgtcgttggtcctacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
ccggagaaggacggtctcttcggcgagcagatcttcggaccctcccgcgactgggagtgc
gcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgcgagcgctgcggcgtg
gaggtcaccaagtcctctgtccgccgcgagcgcatgggccacatcgagctcgccgcaccc
gtgacccacatctggtacttcaagggcgtcccctcgcgcctggggtacctgctggacatg
gctccgaaggacctcgagaaggtcatctacttcgccgcctacatggtcatctccgtcgat
gaggatgcgcgtcaccgcgacctccccacgcaggagaacaacatccgtctcgagctgaag
acgctcggcgaccgtcgcgactccaagatcgcggcccgcctggccaagctggaggaggag
ctcgccgctctcgaggcggaaggtgccaaggccgaccagaagaagaaggtcaaggacgcc
gccgagaaggagatgtcccagatccgcaagggcgccgacgagcagatcgccaagctcgag
cgcgtgtgggaggacttccgcacgctcgaggtcggcacgctcaagcccgaggacgacgtc
ttccacgagctgcaggaccggttcggtcagtacttcgaggcccacatgggcgcggagtcg
atcaagcggcgcctggaggcgttcgacctgcaggccgaggccgagaacctgcgcctgcag
atctccgagggcaagggccagcgcaagatccgtgcgatcaagcgcctgaaggtcgtcagt
tcgttcctgcagaccggcatgagcccggcctcgatggtgctcgacgtcgttccggtgatc
ccgccggagctgcgcccgatggtgcagctggacggtggccgcttcgcgaccagcgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctccgtcgcctgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggcacgggaaaccgtgcgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcgtcgtcggtccccagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatcaagcgcctc
atcgacctcggtcactcgcagaacatcaaggccgccaagcgcgccgtggagcgtacgcgc
cccgaggtgtgggacgtgctcgaggagattatccgcgagcgtcccgtgctgctgaaccgt
gcgcccacgctgcaccgcctgggcatccaggcgttcgagccgcagctcgtggagggcaag
gccatccagctgcacccgctcgtgtgcgcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggtcgaggcccaggccgaggcccgcatcctgatgctc
gcgtcgaacaacatcctgaagccgtcggacggccgcccggtgaccctgccctcgcaggac
atgatcatcggcctgcaccacctgaccacgctcaaggagggcgcgaccggcgagggccgc
gtgttcggctcggtcggcgaggcgatcctggccaaggacgagggcaccctcgacctgcag
gcgaaggtccgcatccgcatccccgggctgagcttcctcgagggccaggcccccgagggc
tacgagcgccacggcctcgtggacacctcgctcggccaggcgatcttcaacgacacgctc
cccaagggctacccgttcgtgcgggagcaggccgacaagggcaagctgtcgcagatcgtc
aacaagctggccgaggagtatcccaaggtggaggtcgccgcgaccctcgaccgcatcaag
gacgccggcttctactgggccacgcgttcgggtgtgacggtggcgctcagcgacatcctg
acgcctccgaacaagaaggagatcgtcgccggctacgagaagcaggccgcgaaggtccag
gcgcagtacgagaagggcctcaccaccgacgccgagcgtcgtcaggagctcatcaagatc
tggaccgaagcaaccgacgaggtccagaaggcgatgcgcgacaacttcccggaggacaac
accatcaaccgcatggtgtcctcgggagcgcgtggtaactggctgcagatccggaacatc
gccggtatgcgaggcctggtgaacaaccccaagggtgagatcatcccccgtccgatcatc
tcctcgtaccgcgagggtctgtcggtggcggagtacttcatcgcgacgcacggtgcccgt
aagggtctggccgacacggccctccgtacggccgactcggggtacctcacgcgtcgtctg
gtggacgtctcgcaggatgtcatcatccgcgaggaggactgcggcacgtcgaagggcctc
gagctcccgatcgccgcggccggtgccgatggcacgctcgtcaaggacgcgaacgtcgag
aactcggtgttcgcccgtaccctctcgtccgacgtggtcgacgcgcagggcacggtcctg
gccgaggccggcgacgacgtgggcgacgtgctcatcaacaagctcgtcgaggcgggcgtc
gagaacatcaaggtccgctcggtcctgacgtgcgactcggcggtcggtgtgtgcgcgaag
tgctacggccgctcgctggccaccggcaagatggtcgacatcggtgaggccgtgggcatc
atcgccgcccagtcgatcggtgagcccggcacgcagctgacgatgcgcaccttccacacc
ggtgggtcggcgtcggcggaggacatcacgcagggtcttccccgtgtgcaggagctcttc
gaggcgcgtacccccaagggtgcctcgccgatcgcggaggccgacggccgcatcgtgatc
gacgagaccgacaaggccaagaaggtcatcctcacgcccgacaacggcgacgagccggtc
gtgtaccccgtcctcaagcgcgcgacgcttctggtcgaggacggccagcacgtctcggtg
ggtcagcccctcctggtcggaacgctcgaccccaaggaggtcatgcgcgtgcagggtgcc
cgcgaggtgcagaagtacctcgtcaacggcgtccagggcgtgtaccgctcccagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcggaaggtcaccgtg
gtcgaccacggcgacacgacgctgctcccgggcgagctggtcgacttcaagaagtaccag
aacatcaaccgggagaccgtggccgagggcaagcgccccgcgtcgggccgccccgagctg
atgggtatcacgaaggcgtcgctcgcgacggagtcgtggctgtcggcggcatcgttccag
gagaccacccgcgtcctgacgcaggcggccatggagggcaagagcgacccgctcgtcggc
ctcaaggagaacgtcatcatcggaaagctcatccccgccggaaccggacttgcgaagtac
cgcaacgtcacggtcgaggcgacggaggaggccaagagcgagcggtaccccaaccgcatc
ttcgcctcggacggcgcgtacagcgacgccgacctgagctacgtcgacttcgatagcttc
tcgacggacgacttcacgcccggcacctacaactga
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