Microbacterium wangchenii: E4K62_09765
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Entry
E4K62_09765 CDS
T06490
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mwa
Microbacterium wangchenii
Pathway
mwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4K62_09765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mwa03019
]
E4K62_09765
03009 Ribosome biogenesis [BR:
mwa03009
]
E4K62_09765
Enzymes [BR:
mwa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E4K62_09765
Messenger RNA biogenesis [BR:
mwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E4K62_09765
Ribosome biogenesis [BR:
mwa03009
]
Prokaryotic type
rRNA processing factors
E4K62_09765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
LPP
Motif
Other DBs
NCBI-ProteinID:
QBR88948
LinkDB
All DBs
Position
complement(2035110..2037605)
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AA seq
831 aa
AA seq
DB search
MADATENQPEHTDETLSAPDSSVASPATTEAEAVLDAVEAVEGDEGAPAALTLPEPDSST
PDVAEVPAPEAATAPDAVDATAPDAGDAAAADAGETTDPEAADAAAPDTAAQPDAADAAA
PDTEAQADAAAPEAQPDQPAASEPQTAEPEQPSGPPTAVSLGLLPETFVSSVSTALHFYA
PEIPVLPARPVEEEPAGPAGARRRNRRRGSSGADDAGEAELPPAPRQRAVEYVTEPQRIK
GSTRLEAKKQRRRDGREAGRRRPVVTEAEFLARREAVDRVMVVRSKYGRVQIAVLEDNVL
VEHYVARNQDASLIGNVYVGRVQNVLPSMEAAFVDIGRGRNAVLYSGEVDWDAVETGNQP
RRIELALKSGDRVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGAMNGISRKLPDTER
ARLKKILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTAQWEHISKQVESIQAPALLHS
EPDLLVKIVRDVFNEDFTKMLIQGEDAQQTISSYLAGVAPDLLERVETYEGDGDPFDDLR
ITEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEAAEE
IVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTR
KKLGLGLLETFSEPCEVCAGRGVIVHHDPVVKHRSGSAAPSSGRRGRGNGNGNAGGNGGS
GGTHVITEGVKSALAQIAASTIATPAADEDGPQGAPDPVEQVVEAPAPARKTRKKRSDAS
KSERTEKDLLLDSVLNALPEPKAPGQGRSRRRVTTAALSGTPVQASPSDQD
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgcaacagaaaaccagccggaacacaccgacgagaccctgagcgcgccggat
tcctccgtcgcctcgcccgccacgaccgaggcggaagccgtgctcgacgcggtcgaggcc
gtggaaggcgacgagggcgcccccgccgcgctcacactgcccgagccggacagctcgacg
ccagacgtggcagaggtccccgcgccggaggccgccaccgcgccggatgcggttgacgcc
acggccccggatgccggggacgcggctgcggcggacgcgggggagaccacggacccggag
gcggccgacgccgctgccccggacaccgcggcgcagcccgacgcagccgacgctgccgcc
ccggacaccgaagcgcaggccgacgcggctgcgccggaggcgcagccggaccagcccgcc
gcatccgagccgcagacggccgagccggagcagccctccggaccgccgacggcggtgtcg
ctgggcctgctgccggagaccttcgtgtcgtcggtgagcaccgcgctgcacttctacgct
cccgagatccccgtcctgccggcgcgcccggtcgaggaggagccggccgggccggccggg
gcgcgccgccgcaaccgccggcgcggttccagcggcgccgacgacgcgggcgaggccgaa
ctgccgccggctccccgtcagcgcgccgtggagtacgtcacggagccgcagcggatcaag
ggatccacgcgtctggaggccaagaagcagcgccgtcgcgacggccgcgaggcggggcgg
cgtcgccccgtggtgaccgaggcggagttcctcgcccgtcgtgaggccgtggaccgcgtc
atggtcgtccgctccaagtacgggcgcgtccagatcgccgtgctcgaggacaacgtgctc
gtggagcactacgtcgcccgcaaccaggacgcgtccctcatcggcaacgtgtacgtcggg
cgcgtgcagaacgtgctgcccagcatggaggcggcgttcgtcgacatcgggcggggccgc
aacgcggtgctgtactcgggcgaggtcgactgggatgccgtcgagaccggcaaccagccg
cgccgcatcgaactcgcactcaagtctggtgaccgggtgctcgtgcaggtcaccaaggat
cccgtgggccacaagggcgcccgcctcaccagccagatctccctccccggtcgctacctc
gtgtacgttcccggcggcgcgatgaacggcatctcccgcaagctccccgacaccgagcgg
gcacggctgaagaagatcctcaaggaggtgctccccgaatcctccggcgtcatcgtgcgc
accgcggccgaaggggccaccgaagaccagctcacgcgcgacgtgcagcggctcaccgcg
cagtgggagcacatctccaagcaggtcgagtcgatccaggcgccggcgctgctgcactcc
gagcccgacctgctggtgaagatcgtgcgcgatgtcttcaacgaggacttcacgaagatg
ctcatccagggtgaggacgcgcagcagaccatctcgtcgtacctcgccggcgtggccccc
gacctgctcgagcgcgtcgagacctacgagggcgacggcgacccgttcgacgacctgcgg
atcaccgagcagatcgagaaggcgctggaccgcaaggtctggctgccctcgggtggctcg
ctcgtgatcgaccgcaccgaggccatgacggtcgtcgacgtcaacacgggcaagttcgtc
ggctcaggcggcaacctcgaggagaccgtcaccaagaacaacctcgaagcggccgaggag
atcgtccgccagctgcgcctgcgcgacatcggcggcatcatcgtggtcgacttcatcgac
atggtgctcgaatccaaccgcgacctcgtgctccgccgtctcgtggagtgcctcagccgt
gaccgcaccaagcaccaggtcgccgaggtcacctccctcggcctcgtgcagatgacgcgc
aagaagctgggtctggggctgctggagaccttcagcgagccgtgcgaggtgtgcgccggt
cgcggcgtcatcgtgcatcacgaccccgtcgtcaagcatcgctcgggaagcgccgcgccc
tcctcggggcgcaggggacgcggcaacggcaacggcaacgccggcggaaacggcggctcc
ggcgggacgcacgtgatcaccgagggcgtgaagtcggcgctcgcgcagatcgccgcctcc
accatcgcgaccccggcggccgatgaagacggcccgcagggcgcgcctgatccggtcgag
caggtcgtcgaggcgccggctccggcgcggaagacccgcaagaagcgttcggatgcgtcg
aagtccgagcgcaccgagaaggacctgctgctggattcggtgctcaacgcccttcccgag
cccaaggcgcccggccaggggcggtcgcggcggcgcgtgaccacggctgccctcagcggg
acacccgtgcaggcctcgccctccgaccaggactga
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