Microbacterium wangruii: QNO26_05410
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Entry
QNO26_05410 CDS
T11147
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mwn Microbacterium wangruii
Brite
KEGG Orthology (KO) [BR:
mwn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mwn03019
]
QNO26_05410 (hrpA)
Enzymes [BR:
mwn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QNO26_05410 (hrpA)
Messenger RNA biogenesis [BR:
mwn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QNO26_05410 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
AAA_22
nSTAND_NTPase5
T2SSE
ResIII
nSTAND3
AAA_30
UvrD-helicase
SLFN-g3_helicase
NACHT
SRP54
Motif
Other DBs
NCBI-ProteinID:
WIM29332
LinkDB
All DBs
Position
complement(1141927..1145916)
Genome browser
AA seq
1329 aa
AA seq
DB search
MSAPEPVIVYPPELPVSAARDEIARAIAENQVVIVAGATGSGKTTQLPKICLELGRTRIA
HTQPRRIAARTIAERVAEEMQVPLGTTVGYKVRFTDNVSADTRVALVTDGILLNEIHRDK
LLRRYDTIIIDEAHERSLNVDFLIGYLRRILPRRPDLKVIVTSATIDPESFAKHFADAAG
EPAPIIEVSGRTYPVEIRYRGRVADADDDGPDDVDALLGALRELDREPAGDVLVFLPGEA
EIRDAMDAVRGMYAKDTSPTEVLPLYGRLSSAEQHRVFERSQVAGVRRRVILATNVAETS
LTVPGIKYVIDAGTARISRYSARSKIQRLPIEAVSQASAQQRSGRAGRTSDGVAIRLYTE
EDFTSRPEYTEPEILRTSLASVILQMLSLGFGDITEFPFLTPPDSRGVKAAFDLLVELGA
VRPATGSGGGRGQGRAARASADAGKGWRLTDIGREIARLPIDPRFARMLIEARRLDVAGD
VLAIVAGLSIQDVRERPEERREEADRLHARFTDPTSDFLSLLNLWNHLREQQSELGSSAF
RRMCRSEHLNYVRVREWFDVHRQLRQLTDAPRAKNSGAADPALVHRAILAGLLSHLGILD
TRSTAAPASGAKGKGAKAPHGRPRAEYRGARGARFAIFPGSGLRKASPDAVMAAELVETS
RLYARTVAAIDPEWAEELAGDLVHRSLSDPHWSKDAGAAVAAEKVTLFGLEIVPRRRVQL
ARIDRPLAREMFIRHALVEGEWNVTHLDKRLTAFERRNLELRRRLEKIEERERRRDILAG
DEAVYAFYASRLPHDVFDVRSFEAWWRDASSRTPRLLDLTEADLVDDASRADERDFPMRW
QQGDQVLSLAYRFEPGAPDDGVSVVVPLALLAQLRPDGFDWQVPGLRGELIAGLLRALPK
AIRRSVVPAADWAARFAEELAGDGPESHDGLPPRALRDALAARVQRVANQPVTAADFDLE
RVPAHLGMSFRAVDERGRTVASDRDLRALQDRLADRARASVSRSLTAPRGAGPGSPAPRP
GAVAAVTGSPGGSADAGTSGITEQSGLTDWTIGDLPALVDTRVAGGVVRGYPSLVDDGAS
VSVRIQATPEAAQRLTHAGARRLLLLTVPSPAPYVLEHLTAQEKLALAASPYPSAKALIE
DARVAVADAVLARVMSGALVRTAADFARVRDEFSRTVVDELFQTVSLTARILTSSREVEK
AVRGQNSMTLLAALGDIKTQVAGLVFPGFVSRTGLARLTHLPRYLAGALERVSQLSDNPG
RDRQRLTEYERMAALYAEAGGTIPIDEHAPANLVHTRWLLEEYRVSLFAQRLGTAEPVSP
QRIQKALRG
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgcaccagagcccgtcatcgtctacccgcccgagctgcccgtcagcgccgcgcgg
gacgagatcgcgcgcgccatcgccgagaatcaggtcgtcatcgtcgccggcgcgaccggc
tcgggaaagaccacccagctgccgaagatctgtctggagctcgggcgcacccgcatcgcg
cacacccagccccgccgcatcgccgcccgcaccatcgccgagcgcgtggccgaggagatg
caggtgccgctgggcaccaccgtcggctacaaggtgcgcttcaccgacaacgtctcggcc
gacacccgggtggcgctggtcaccgacggcatcctgctcaacgagatccaccgcgacaag
ctgctgcgccgctacgacacgatcatcatcgacgaggcgcacgagcggtctctgaacgtc
gacttcctgatcgggtacctgcgccgcatcctgccccgccgccccgatctgaaggtcatc
gtcacctcggcgacgatcgaccccgagagcttcgcgaagcacttcgcggatgccgcgggc
gagcccgcccccatcatcgaggtgtccggtcgcacctaccccgtggagatccggtaccgc
ggtcgcgtcgccgacgccgacgacgacggccccgacgatgtcgacgcgctgctgggggcg
ctgcgcgaactcgaccgcgaaccggccggcgacgtgctggtgttcctgcccggcgaggcg
gagatccgcgacgcgatggatgccgtacgcggcatgtacgcaaaggacacctcgccgacg
gaggtgctgcccctgtacggccgactgtcgtccgccgagcagcaccgggtcttcgagcgc
tctcaggtcgcgggcgtccggcgccgggtgatcctcgcgaccaacgtcgcggagacgagc
ctcaccgtccccggcatcaagtacgtcatcgacgccggaaccgcccgcatctcgcgctac
agcgcgcgctccaagatccagcgcctgccgatcgaggccgtctcgcaggcgtcggcgcag
cagcgctccggtcgcgccggacgcacctcggacggtgtcgcgatccggctgtacaccgag
gaggacttcacctcccggcccgagtacaccgagcccgagatcctgcgcacgagcctcgcc
tcggtgatcctgcagatgctgtcgctcggattcggcgacatcaccgagttcccgttcctc
acgccgcccgactcccgcggggtcaaagccgcgttcgacctgctcgtcgagctcggcgcg
gtgcgtcctgcgacgggctcggggggcggtcgcggccagggtcgcgcggcgcgcgcctcc
gccgacgcgggcaaggggtggcgcctcaccgacatcgggcgtgagatcgcgcggctcccc
atcgacccccggttcgcgcgcatgctcatcgaggcgcggcgactcgacgtcgccggcgac
gtgctggcgatcgtggcggggctgtcgatccaggacgtgcgcgagcgaccggaggagcgc
cgcgaggaggcggaccgccttcacgcgcgcttcaccgacccgacgagcgacttcctcagc
ctgctgaacctgtggaaccacctgcgcgagcagcagtccgagctcggctcgagcgcattc
cgccgcatgtgccgctccgagcacctcaactatgtgcgggtgcgcgagtggttcgacgtg
caccggcagctgcggcagctgaccgacgccccgcgggcgaagaacagcggcgccgccgac
ccggcgctggtgcaccgggcgatcctcgccgggctgctgtcgcacctcggcatcctcgac
acccggtccacggcggcaccggcgtccggcgcgaagggcaagggcgcgaaggctcctcac
ggacggccgcgcgcggagtaccgcggagcgcggggcgcccgcttcgcgatcttccccggg
tcggggctgcgcaaggcctcccccgacgcggtgatggccgccgagctggtcgagacatcg
cgactgtatgcgcgcaccgtcgcggccatcgacccggagtgggcagaggagctcgccggc
gacctggtccaccgcagcctcagcgatccgcactggtcaaaggatgccggtgccgccgtc
gccgccgagaaggtcaccctgttcggcctcgagatcgtgccgcgccgccgggtgcagctg
gcccgcatcgaccgcccgctcgcgcgggagatgttcatccgccacgccctcgtcgaaggc
gagtggaacgtcacccatctcgacaagcgactgaccgcgttcgagcggcgcaacctcgag
ctgcgccgccgcctggagaagatcgaggagcgcgagcgccgccgcgacatcctcgccggc
gatgaggcggtctatgccttctacgcctcccgcctgccgcacgacgtcttcgatgtgcgc
tcgttcgaggcgtggtggcgggatgcctcgtcccgcacgccgcgcctgctcgacctcacc
gaggcggacctcgtcgacgacgcctcgcgcgccgacgaacgcgacttcccgatgcgctgg
cagcagggcgaccaggtgctgtcgctcgcctaccggttcgagccgggcgcccccgacgac
ggcgtgagcgtggtggtgccgctggcgctgctcgcgcagctgcggcccgacggcttcgac
tggcaggtgccggggctgcgcggcgaactcatcgccgggctgctgcgcgcccttcccaag
gccatccggcgctccgtcgtgccggctgcagactgggccgcacgcttcgccgaggagctc
gccggcgacggtccggagtcgcacgacggcctgccgccccgcgccctgcgcgacgcgctg
gccgcgcgcgtgcagcgtgtggcgaaccagccggtcaccgccgccgacttcgacctcgaa
cgcgtgcccgcgcacctggggatgtcgttccgcgccgtcgacgagcgcggccgcaccgtg
gcatccgatcgcgatctgagggcgctgcaggaccgcttggccgaccgtgcccgcgcctcg
gtcagccgatcgctgaccgcgccacgcggagccggcccgggttcccctgcgccacggccc
ggcgcggtggccgccgtcaccggctcgcccggcggctcggcagacgcgggcacctcgggc
atcaccgagcagagcgggctcaccgactggaccatcggcgacctgcccgcactggtcgac
acccgtgtcgccggcggtgtcgtgcgcggctacccctccctcgtcgacgacggcgcgtcg
gtgtcggtgcgcatccaggcgacccccgaggccgcgcagcgactcacgcatgccggggcg
cggcgtctgctgctgctcacggtgccctcccccgccccgtatgtgctcgagcacctgacc
gctcaggagaagctcgcgctggcggcttctccgtacccctcggcgaaggccctcatcgaa
gacgcgcgcgtcgccgtcgccgatgccgtgctcgcgcgggtgatgtcgggcgcgctggtg
cgcaccgccgccgatttcgcgcgcgtgcgtgacgaattctcgcgcaccgtggtcgacgaa
ctcttccagacggtgtcgctgaccgcgcgcatcctcacctcatcccgcgaggtggagaag
gccgtgcgcgggcagaactcgatgacgctgctcgccgccttgggcgacatcaagacccag
gtggcgggcctcgtcttccccggtttcgtctcgcgcaccgggctggcgcgcctgacgcat
ctgccgcgctaccttgccggggccctcgagcgggtgtcacagctgtccgacaatcccggg
cgcgaccggcagcgtctcaccgagtacgagcggatggccgcgctctacgccgaggccggg
gggacgatcccgatcgacgagcacgccccggcgaacctcgtccacacccgctggctgctg
gaggagtaccgggtcagcctgttcgcccagcggctcggcaccgccgagccggtttcgccc
caacgaatccagaaggctctgcgaggatag
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