Candidatus Mycobacterium wuenschmannii: PT015_06340
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Entry
PT015_06340 CDS
T09639
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mwu
Candidatus Mycobacterium wuenschmannii
Brite
KEGG Orthology (KO) [BR:
mwu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mwu03019
]
PT015_06340 (hrpA)
Enzymes [BR:
mwu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PT015_06340 (hrpA)
Messenger RNA biogenesis [BR:
mwu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PT015_06340 (hrpA)
BRITE hierarchy
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
AAA_25
T2SSE
RsgA_GTPase
PhoH
Motif
Other DBs
NCBI-ProteinID:
WIM89081
LinkDB
All DBs
Position
1303053..1306952
Genome browser
AA seq
1299 aa
AA seq
DB search
MVAPSVSDLRARLDGLTLRDAARFGRRLRGIRGADPAKLAKLADQITAAESLVVARRATV
PTIGYPALPISERRQEIADALRNHQVVVVAGETGSGKTTQLPKICLDIGRGVRGMIGHTQ
PRRLAARTVAQRIADEVGSPLGETVGYTVRFNDQVGDRTLVKLMTDGILLAEIQRDRRLM
RYDTLIIDEAHERSLNVDFLLGYLRDLLPRRPELKVIVTSATIEPQRFAAHFGGAPVIEV
SGRTYPVEVRYRPLEVPVTLAAQEDPDDPDDEIVRTETRDEIEAIVDAIHELESEPPGDV
LVFLSGEREIRDTAEALSALKNTEVLPLYARLPTAEQQRVFAPHTGRRVVLATNVAETSL
TVPGIRYVVDPGTARISRFSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRLYSEQ
DYTTRPRFTDPEILRTNLAAVLLQMAALELGDVEEFPFLDPPDRRSIRDGVQLLQELSAF
DRQGDITDLGRRLARLPVDPRLARMILAADTEACVREILVVAAALTIPDPRERPTDREAA
ARQSHARFTDEHSDFMSYLNLWRYLREQRNTLSGSAFRRMCRNEFLHYLRIREWQDLVGQ
LRSIARDLGIAESDEPADAGRVHAALLAGLLSHVGMRREDASEYLGARNSRFVLVPGSAL
AKRPPRWVVVAELVETSRLFGRTAARVQPEIVERSAGELVQRSYSEPHWDAKRGEVMAFE
RVTLYGLPLVARRRTGYARIEPAVARDLFIRHALVDGDWQTRHHFFRDNAALRAELEELE
ERARRRDLLVSDDDVFAWYDSRIPADVVSARHFDGWWRKQRHETPALLTFTRDALLRTVD
DADTDRPDTWRSGDVRLPLTYRFEPGATDDGVTVHVPIDVLARLGGDEFAWQVPALREEL
VTGLIKSLPKELRRNFVPAPDTARAVLATIDTEQEPLLAALQRELQRRSGILVPIDAFDL
DKLPAHLRVTFAVESPEGTELARGKDLAALQERLAAPARQAVATALASDVERKGLRDWPN
ELAELPRVIERVVDGRAVRGFPGFIDTGNAVDLRVFTTSAQQQQAARAGLRRLLRLTISM
SPKSVERQLDPRTKLLLGTNPDGSLHALIDDCVEAAVDASIAGPVWTHDEFVALRELVAA
SLPADTRATMARVEKVLAAAQEARLALPTQASPTQADAVADVHSQFDRLLAPGFVARTGN
ARLGDLTRYLAAIRRRLDQLPHATNADRDRMERVRAVQDAYDEVVEGLPAARRTDTDIRE
IAWQIEELRVSLWAQQLGTPRPVSEQRVYRAIDQISFPR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtggttgccccgtccgtctccgacctgcgcgcgcgcctcgacggtctgaccctgcgagac
gccgcgcggttcggccggcggttacgaggtatccgcggcgccgatcctgcgaaactggcc
aagctcgccgaccagatcaccgccgcggaaagcctcgtggtcgcgcgtcgagccaccgtc
ccgacgattggctatccggcgcttccgatcagtgaacggcgtcaggagatcgccgacgcg
ctgcgcaatcaccaagtggtcgtggtcgccggcgaaaccgggtctgggaagacgacccag
ttgcccaagatctgcctcgacatcggccgcggcgtgcgggggatgatcgggcacacccag
ccccgccggcttgcggcccgtaccgtggcgcagcgcatcgccgacgaagtgggcagcccg
ctcggcgaaaccgtcggctacacagtccgattcaacgatcaggtcggcgaccgcaccctg
gtcaaactcatgaccgacggcatcctgctcgccgaaattcagcgcgaccgtcgcctgatg
cgctacgacacgctgatcatcgacgaggcccacgagcgcagcctcaacgtcgacttcctg
ctcggctacctccgcgacctgctgccgcggcggcccgaactgaaggtgatcgtcacgtcg
gcgacgatcgaaccgcaacgcttcgcggcgcatttcgggggcgcccccgtgatcgaggtg
tccggccgcacgtaccccgtcgaagtacgttaccggccgctggaagtgccggttacgctt
gcggcacaggaggatccggacgacccagacgacgagatcgtgcgaaccgaaacccgcgac
gagatcgaggcaatcgtcgacgccatccacgaactcgaatcagagccaccgggcgatgtc
ttggtcttcttgtccggcgagcgcgaaatacgcgacaccgctgaggctttgagcgcactg
aagaataccgaagtattgccgctgtatgcccggttgccgacggcggagcagcaaagagtg
ttcgcgccgcacaccggacgccgtgtggtgctggcaaccaacgtcgccgagacatccctg
acggtgcccggcatccggtacgtcgtcgaccccggcaccgcacgcatctcgcggttcagt
cgccgactgaaggtgcagcgcctgccgatcgagccgatatcgcaggcctccgccgctcaa
cgggccggccggtgcgggcgagtcgctcccggagtctgcatccgcctgtattccgagcag
gattacaccacgcgtccgcgcttcaccgatcccgagatcctgcggacgaacctggccgcg
gtgctgttgcagatggcggcgctggaattgggggacgtggaggaatttcccttcttggac
ccgccggaccgacgcagcatccgcgacggcgtgcaattgctgcaggaactgagtgcgttc
gatcgacagggcgacatcaccgacctcggccgccgactggcccgcctgcccgtcgacccg
aggctcgcgcggatgatcctggcggccgacaccgaggcgtgcgtgcgcgaaatcctggtg
gtggccgcggcattgacaatccccgaccctcgcgaacgccccaccgaccgtgaagcggcg
gcccgccagagccatgcccgattcaccgacgagcactccgacttcatgtcgtatctgaac
ctctggcgttatctgcgtgagcagcgaaacactctatcgggcagtgcgtttcggcggatg
tgtcgtaacgagtttctgcactacctgcgcatccgggagtggcaggatctggtcggccaa
cttcgcagcatcgcccgcgacctcgggatcgccgaaagcgacgagccggcggatgctggc
cgggtccacgctgcgctgctggcggggttgctgtcgcacgtgggaatgcgccgcgaggac
gcgagcgagtatctgggagcgcgcaattcgcggttcgtactcgtgccgggatcggcgctt
gccaagcgtccgccacgctgggtcgtcgtcgccgagttggtcgagaccagccgactcttc
ggtcgaaccgccgcgcgggttcagcccgagatcgtggagcgcagcgcgggggagttggtg
caacgcagctacagcgaaccgcattgggacgcaaagcgcggtgaggtgatggccttcgaa
cgagtcacgctgtacggccttcctctggtggcgcgccgtcgcaccggctacgcccggatc
gaaccggcggtggcgcgggatctgttcatcaggcacgcgctggtcgacggagactggcag
actcgccatcacttcttccgcgacaacgccgcactgcgcgccgaactcgaggaactggag
gagcgggcgcgccggcgcgacctcctggtcagcgacgacgacgtcttcgcgtggtacgac
agtcgcatccccgccgacgtcgtctcggcacgtcatttcgacgggtggtggcgcaagcaa
cgacacgagacaccggcgctactcaccttcactcgcgacgccctgttgcgcaccgtcgac
gacgcggacaccgaccgcccggatacctggcggagcggcgacgtccggcttccgttgacc
taccgcttcgaaccgggcgcgaccgatgacggcgtgactgtccatgtcccgatcgacgtg
cttgcccgactgggcggcgacgagttcgcctggcaggtgccggcgctgcgcgaggagctg
gtcacgggtctcatcaagtctctcccgaaagagttgcgccgcaacttcgttcctgcaccg
gacaccgcgcgagcggtgcttgccacgatcgacaccgagcaggaaccgttgctggcggct
ttacaacgcgaattgcagcgccgcagcggcattctggtgccgatcgacgcgttcgatctc
gataaacttcccgcacatctgcgagtgacgttcgccgtcgagtcacccgaaggcacggag
ctggcccgcggcaaggacttggccgcattgcaggagcggctggcggcgccggcccgacag
gccgtcgcgacagcgctggcgagcgatgtcgaacgaaaagggctgcgggactggccgaac
gagctcgcggagttaccccgcgtcatcgagcgcgttgtcgacggacgcgcggtccgcgga
ttccccggcttcatcgacaccggtaacgccgtcgacctacgcgtcttcacgacgtccgcc
cagcagcaacaggcggcgcgcgccggcctgcgccgtctcctacgtttgaccatttcgatg
tcaccgaaaagcgttgaacggcaactcgacccacgcaccaagttgctgctgggcaccaat
cccgatgggtcgctgcacgccttgatcgacgactgcgtagaggcggcggtcgacgcgtcg
atcgccggaccggtgtggactcacgacgagttcgtcgcccttcgtgaactggtggccgca
agcctcccagcggatacccgggccacgatggctcgcgtcgagaaggtcctggcggcggcg
caggaagcgcgcctggcactgcctacgcaggcgtcacccacccaggcggacgcggtcgcc
gacgtgcattcacaattcgatcgcctgctcgcgccgggctttgtcgcccgcaccggtaac
gcacgcctcggcgacctcacccgctacctggccgcgattcgccggcgcctcgaccagttg
ccacacgcgaccaacgccgaccgcgaccggatggagcgcgtgcgcgcggtccaggacgcc
tacgacgaggttgtcgaagggctacccgcggcgcgccgaaccgacaccgatatccgcgag
atcgcctggcagatcgaggaattacgagtcagcctgtgggcccaacagctcggcacacct
cgcccggtcagcgaacagcgcgtctaccgggcgatcgaccagatcagcttcccgcgctga
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