Myxococcus xanthus: MXAN_1013
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Entry
MXAN_1013 CDS
T00366
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mxa
Myxococcus xanthus
Pathway
mxa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mxa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MXAN_1013 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mxa03400
]
MXAN_1013 (mfd)
Enzymes [BR:
mxa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MXAN_1013 (mfd)
DNA repair and recombination proteins [BR:
mxa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MXAN_1013 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABF91585
UniProt:
Q1DDJ9
LinkDB
All DBs
Position
complement(1179075..1182641)
Genome browser
AA seq
1188 aa
AA seq
DB search
MDTPFIQTQDGGAAGDPFAQVVDELRAGQRVRTQGLKGAARGHVLARLHGALRAPLVCVA
VDEEAADALAADLSFFLGGQGSLLAPRVLRLPADEVLPYDEVSPDAAAVTERLGALFHLG
QGTRFPALVLSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVED
VGTFSVRGDLLDVFSPLYDKPVRLEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVL
LTDETRPRAESAARAVADRINLPTIKLREQLDALREGLPGFGMEGLLPGFFEDGLSTVFD
FLRDWSPEAPVIYLDDPLGQDRAADTLWEELERSHGAAEARQELICPPLEHFLSREDVNQ
RMQSFRVLEGGGLSLAQTERPPVHFSFGGTQDLREAILAHHGEEGALSPLVERLERWREL
RVACVVACGTLSQADRLKRLLMDRNVMVKVHTEPLEDAVALYEPSIRAHLFTGEVSHGFV
DGPGGLAVLADEEIFGARARRRPKRSKKLDAFGSGFGDLKEGDLIVHTDFGIGRYAGLTK
MEVNGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFSGGDPTQVQLDKLGTTSWEKTKKRVK
EQLLKMAAELLQIAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQK
PEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPV
TVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQ
KESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVV
KEAIEREVARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFT
EKKYQVLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPS
RRAVTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGDKQSGAIAEIGFDMYAQL
LEEAVAEMQGQPPKVQIEPDVTLPMPALIPDDYVSDVHQRLVFYKRFSQASHPDEVTDLR
AELVDRYGEAPDEVDHLSELTLLKIDMRDLRLRGLEVGTTRLVVTLGADALLDGPKVAGL
VQRSKGVYRLTPDMKLIARAPQGASGQDLISEAKKVLRDLSHCALPQA
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggacactcccttcatacagacgcaggacggcggcgcggcgggcgaccccttcgcccag
gtggttgacgaacttcgggcggggcagcgcgtccggacgcaagggctcaagggggcggcg
cgcggacatgtgctcgcccgcctgcatggcgcgctgagagcgccgctggtctgcgtggcg
gtggacgaggaggccgccgacgcgctcgccgccgacctgtccttcttcctgggcggccag
ggcagcctgctggcgccgcgcgtgctgcggctgcccgcggacgaggtgctgccctacgac
gaggtgtctcccgacgcggcggccgtcacggagcggctgggcgccctcttccatctgggg
cagggcacgcgcttccccgcgctggtgctgtcggtgcgcgcgctgcaccgcaaggtgctg
ccgctggcggtgatgcgcgcgctggccgcgcgggtggccgtggggcaggacttcgaccgg
gactcgctggcgcgccggctggtgcgcatgggctaccagaacagccccttggtggaggac
gtgggcacgttcagcgtgcgcggtgacctgctggacgtcttcagccccctctacgacaag
cccgtccgcctggagttcttcggcgacaccatcgagtccatccgcgccttcgacccgcag
tcccagcgcacggtggacgcgctgaaggaagtggacctggtccccgcgcgcgaggtgctg
ctcaccgacgagacgcgcccgcgcgccgagtccgccgcccgcgcggtggccgaccgcatc
aacctgcccaccatcaagctgcgcgagcagttggacgccctgcgcgaaggcctgcccggc
ttcgggatggagggcctgctgcccggcttcttcgaggacgggctgtccacggtgttcgac
ttcctgcgcgactggagccccgaggcgcccgtcatctacctggacgacccgctgggccag
gaccgcgcggcggacacgctgtgggaggagttggagcgctcacacggcgcggccgaggcc
cggcaggagctcatctgtccgccgctggagcacttcctctcccgtgaggacgtgaaccag
cggatgcagtccttccgcgtgctggagggcggtggtctgtcgctggcgcagacggagcgc
ccgccggtgcacttcagcttcggcggcacccaggacctgcgcgaggccatcctggcgcac
cacggtgaagaaggcgcgctgtccccgttggtggagcggctggagcgctggcgcgagctg
cgcgtggcctgcgtggtggcgtgcggcacgctgagccaggcggaccggctgaagcggctg
ctaatggaccgcaacgtgatggtgaaggtccacacggagccgctggaagacgctgtggcg
ctgtacgagccgtccatccgcgcgcacctcttcacgggcgaggtgagccacggcttcgtg
gatggtcctggcgggctcgcggtcctggcggacgaggagattttcggcgcgcgcgcgcgc
cggcgtcccaagcgcagcaagaagctggacgcgttcggctccggcttcggggacctgaag
gaaggcgacctcatcgtccataccgacttcggtatcggccgttatgcgggcctgacgaag
atggaggtcaacggcgtgcccggggacttcctcgtcctggagtacgcgggccgggacaaa
atctacctgccggtgggccgcatgcggctcatccagaagttctccggcggcgaccccacg
caggtgcagctggacaagctgggcaccacgagctgggagaagacgaagaagcgcgtcaag
gagcagctgctcaagatggcggcggagctcctccagattgccgccgcgcgcaaggcgcac
cccggccatgccttcagcgcgccggaccggtacttcgcccagttcgaagcggacttcgag
ttcgaggagactccggaccaggccaaggcgattgaagacgtgctggcggacatgcagaag
ccagagcccatggaccggctcgtctgcggcgacgtcggctacggcaagacggaggtggcc
atgcgggccgccttcaaggccgcgctggaccgcaagcaggtggcggtgctggtgcccacc
acggtgctggcgcagcagcacttcctttccttcaagaagcgcttcgcggactaccccgtc
acggtggaggtcatctccgggctgaagaaggcgccggaggtgcgggaaatcctcaagcgc
gccaaggagggcaaggtcgacatcctcatcggcacgcacaagctgctgggcggcgaggtg
gccttcaaggaactgggcctgatgattgtcgacgaggagcagcgcttcggcgtgaagcag
aaggagtcgctgaagaagtggcgctcccagattgacgtgctcacgctgacggccacgccc
attccccgcacgctgcacatgagcatgtcgggcgtgcgcgacatgagcatcatcgccacg
ccgccgcaggaccgccgggccatccgcaccttcgtgatgaagtacgaggacacggtggtg
aaggaggcgattgagcgcgaggtggcgcgcggcggacaggtgttcttcgtccacaaccgc
gtggagtcgctgccctccatcgagacgcagctgcgcgcgctggttccccaggtcagcatc
ggcgtggcgcacgggcagatgggcgaagggcagctggagaaggtgatgctcgccttcacg
gagaagaagtaccaggtgctgctgtgcaccagcatcatcgagagcggcatcgacatctcc
agcgccaacacgatgattgtgaaccgggcggaccagttcggcctggcgcagctctaccag
ctccgtggccgagtgggccggtccaaggagcgcgcgtatgcgtacctgctggtgccgtca
cggcgcgcggtaacgaaggacgcgcagcggcgcctggaggtgctccagaacttcaccgag
ctgggcgcgggcttctccatcgccagccatgacctggagattcgcggcgcgggcaacctg
ctgggcgacaagcagtcgggcgccatcgcagagattggcttcgacatgtacgcgcagctc
ctggaggaagccgtcgcggagatgcagggccagccgcccaaggtgcaaatcgaacccgac
gtcacgctgcccatgccggcgctcatcccggacgactacgtcagcgacgtccaccagcgg
ctcgtcttctacaagcgcttcagccaggccagccacccggacgaagtcacggacctgcgc
gccgagctggtggaccggtacggcgaagccccggacgaggtggaccacctgtccgagctg
acgctgctgaaaatcgacatgcgcgacctgcgcctacgcgggctggaggtgggcaccacc
cggctggtggtcacgctgggcgcggacgcgctgctggatggccccaaggtggcggggctg
gtgcagcgctccaagggcgtctaccgcctcaccccggacatgaagctcatcgcccgcgcg
ccacagggcgccagtggccaggacctcatctccgaggccaagaaggtgctgagggatttg
agccactgcgcactgccgcaggcgtag
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