Myxococcus xanthus: MXAN_3055
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Entry
MXAN_3055 CDS
T00366
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mxa
Myxococcus xanthus
Brite
KEGG Orthology (KO) [BR:
mxa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mxa03019
]
MXAN_3055 (hrpB)
Enzymes [BR:
mxa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MXAN_3055 (hrpB)
Messenger RNA biogenesis [BR:
mxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MXAN_3055 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABF90629
UniProt:
Q1D7W0
LinkDB
All DBs
Position
complement(3583089..3585653)
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AA seq
854 aa
AA seq
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MADVALPIDPLLPDIVSTLRGARSLVLEAPPGAGKTTRVPRALLEAGLGQGKEIIVLQPR
RLPTRLAAQRVSEELGERVGESVGYQVRFEDVRSAKTRLSFVTEGVLGRRLLSDPKLRDV
GIVVLDEFHERHLSADISLALLRRLQETARPDLKVVVMSATLEAEPIRAYLGGCPSLRSE
GRRFDVSVEYLPAPDDRHLDQQVLSGIKRLFTQGVDGDVLVFLPGAGEIRRARDACAEFA
ERHGTDVLPLHGDLSPAEQDRAVRRSSRRKIILSTNVAETSVTIDGVAVVIDSGLARVAS
HSPWSGLPTLKLSKVSRASAIQRGGRAGRTRAGHCLRLYTQHDFDGRPEQDAPEIRRTDL
AETVLSLRASGITDLAAFPFFEPPPAASLDAAETLLRRLGAVDPAGTVTEVGERLLRFPV
HPRQARIIVEGERRGVGAEAAVLAALMGERDIRREARANLGQGGRPAAVVSGPSDLLELF
ERFREAERANFASGRMHSLSLEAGAVQSVDRVQKQLRRAVRGQGPRPQRPEDVEQALMLS
VLAGYPDRVARRRRPRAPELLMFGGGSATLSDVSVVQDADLMVAADAEGRPGKGAVVRLA
SAVEPEWLLDLYPDTLEEVDTLQWNAEARRVERLTRLSYGNLVLEETRTPAPASEATARV
LVEAALAAGPGKFADPEALEQWRTRVALLAGAFPEAKFPTIDDTFLRDALASLCSDARSF
KDLEGVSLLDALYARLTSEQQRLLATHAPERVTLPGGRGVKVHYEPGKPPWVESRLQDFF
GMAQGPNVCAGRVPLVLHLLAPNMRAVQVTTDLAGFWERHYPAIRKELCRKYPRHSWPED
PQHAQPPAPRPPRR
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtcgcgcttcccatcgatcccctgttgccggacatcgtctccacgctgcgt
ggcgcgcggtcgctcgtcctggaagcgcctcctggcgcgggaaagacgacgcgcgtgcct
cgcgcgctcctggaggccgggctcggtcaggggaaggaaatcatcgtcctccagccacgc
cggcttcccacgcggctcgccgcacagcgcgtgtccgaggaactgggcgaacgcgtgggc
gagtccgtgggctaccaggtccgcttcgaggacgtgcgcagcgcgaagacgcggctgtcc
ttcgtcaccgaaggcgtcctcggccgccggttgctctccgacccgaagcttcgcgacgtg
ggcatcgtcgtgctcgacgagttccacgaacggcacctgtccgcggacatctccctggcc
ctgctgcggcgccttcaggagacggcgcgccccgacctcaaggtcgtcgtcatgtccgcg
acgctggaggcggagcccatccgggcgtacctcggcgggtgtccctcgctccgctccgag
ggccggcgcttcgacgtgagcgtggagtacctgcccgcgcccgatgaccgacacctggac
cagcaggtgctctccggcatcaagcggctcttcacccaaggcgtggatggcgacgtgctc
gtcttcctcccaggcgccggcgaaatccgccgcgcacgcgacgcatgcgccgagttcgcc
gaacgccacggcaccgacgtgctccccctccacggcgacctgtcccccgccgagcaggac
cgcgccgtgcggcggagctcgcgacggaagatcatcctctccaccaacgtcgcggagacg
tccgtcaccatcgacggcgtggcggtggtcatcgactccgggctcgcgcgcgtcgcctcc
cactccccctggtctggcctgcccaccctcaagctgtccaaggtcagccgcgcctccgcc
atccagcgcgggggccgcgcgggccgtacgcgtgcgggccactgcctgcgcctctacacc
cagcacgacttcgacggccgcccggagcaggacgccccggagattcgccgcacggacctg
gccgaaaccgtcctctccctgcgcgcgtccggcatcaccgacctggccgccttccccttc
ttcgagccgcccccggccgcgtccctggacgccgcggagacgctgctccgccgactgggc
gcggtcgaccccgccggcaccgtcacggaggtgggcgaacggctcctgcgcttccccgtc
cacccccgtcaggcgcgcatcatcgtcgagggtgagcgccggggcgtgggcgccgaagcc
gccgtgctcgccgccctcatgggcgaacgcgacatccgccgcgaggcccgcgccaacctg
ggccagggaggacgcccggccgccgttgtcagcgggccgtccgacctgctggagctcttc
gagcgcttccgcgaagccgagcgcgcgaacttcgcgtcgggccgcatgcactccctctcc
ctggaggccggcgccgtgcagtccgtggaccgggtccagaagcagctgcggcgcgcggtg
cgtggacagggcccccggccccagcggcccgaggacgtggaacaagcgctgatgctcagc
gtgctcgccggctaccccgaccgcgtcgcccggcggcgtcggccccgtgcgcccgagctg
ctgatgttcggaggagggtcggccacgctgtcagacgtgagcgtggtccaggacgccgac
ctcatggtggccgccgacgccgaaggacggcctggcaagggcgccgtcgtgcggctcgcc
agcgccgtggagccggaatggctgctcgacctctacccggacacgctggaggaggtggac
accctccagtggaacgccgaggcccgacgcgtggagcggctcacccgcctgtcctacggc
aacctcgtcctggaggagacccgcacgcccgcgcccgcctctgaggccacggcgcgcgtg
ctcgtggaagccgcgctggccgcggggcccggcaagttcgcggacccggaggccctggag
cagtggcgcacccgcgtggccctgctggccggggccttccccgaggcgaagttccccacc
atcgacgacaccttcctgcgcgatgcgctggcgtcgctctgctcggacgcgcgcagcttc
aaggacctggaaggcgtgtccctgctggacgcgctctacgcacgcctcacctccgagcag
cagcggttgctggccacgcatgcgccggaacgggtgacgctccccggaggccgcggcgtc
aaggtccactacgagccgggcaagccgccctgggtcgagtcgcgactccaggacttcttc
ggcatggcgcaggggcccaacgtctgcgcggggcgcgtcccgctggtgctgcacctgctg
gcgccgaacatgcgcgcggtccaggtgacaaccgacctcgcaggtttctgggagcggcac
taccccgccatccgcaaggagctctgccgcaagtacccccggcactcgtggcccgaggat
ccgcagcatgcccagccgcctgccccccggccaccgcgccgttga
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