Myxococcus xanthus: MXAN_5426
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Entry
MXAN_5426 CDS
T00366
Name
(GenBank) conserved hypothetical protein, UPF0027 family
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mxa
Myxococcus xanthus
Brite
KEGG Orthology (KO) [BR:
mxa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mxa03016
]
MXAN_5426
Enzymes [BR:
mxa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MXAN_5426
Transfer RNA biogenesis [BR:
mxa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MXAN_5426
Prokaryotic type
tRNA splicing ligases
MXAN_5426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABF87339
UniProt:
Q1D1A0
LinkDB
All DBs
Position
complement(6755985..6757478)
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AA seq
497 aa
AA seq
DB search
MSEPPCHEASMETLPEVPQQLEPLIRQIGPALYELGQGFREDMRVPARIVADSELLQQMV
QDRSVPQLVNVTTLPGIQGFAIGMPDMHEGYGFPVGGVAGTALPDGVISPGGIGFDINCG
VRLLATGLRHEDVKEVLPKVAHDLARSIPTGFGRHGRLSLAPEQMDRVLTEGVPYLVDVL
GLGTPEDVDYLEARGCLDGADTAKVSVRAQERGHDQLGTLGGGNHFLEVQRVERVLDSEA
APALGLFEGQLTVLIHTGSRGLGHQVCTDAVRTMDRALAREGIQLVDRQLACAPLSSAEG
QDYFAAMCAAANFAWANRQVLTYRVREVFRRWFGDRSAAWPRIVYDVAHNIAKLEPHGGQ
RLCVHRKGATRAFGPGHPELPAAYHQVGQPVFIPGSMGTASFVLVGKEAAEAISLSSACH
GAGRRLSRAASKRQVVGSELRAALNRQGIAVECPSNAELAEEAPLAYKDVDRVVDVVEAA
GIARKVARLVPLAVLKG
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcccccctgtcatgaggcaagcatggagacacttcccgaggtcccgcagcag
ctcgagccgctcatccggcagatagggcccgccctgtatgaactgggccagggcttccga
gaggacatgcgggtaccggcccgcatcgtcgcggactcggagttgctccagcagatggtc
caggaccggagcgtgcctcagctcgtcaatgtcaccacactgccgggcatccagggcttc
gccatcgggatgccggacatgcacgagggctacggcttccccgtgggcggcgtggcgggt
accgcgttgccggatggcgtcatctcgccgggcggcatcgggttcgatatcaactgcggc
gtgagattgctggcgaccgggcttcggcacgaggacgtgaaggaggtcctgccgaaggtg
gctcacgacctcgctcggagcattcccacaggcttcggccggcatggccgcctgtcgttg
gcgcccgagcagatggatcgggtcctcacggagggcgtcccctatctggtggacgtgctg
ggactgggaacaccggaggacgtcgactacctggaggccagaggctgcctcgatggcgcc
gacacagccaaggtctctgtccgggcccaggagcgggggcatgaccagcttggaacgctc
ggtggcggcaaccacttcctggaagtgcagcgggtggagcgcgtcctcgactcggaggcg
gccccggcgctcgggctgttcgagggccagctcaccgtgctcatccatacgggctcgcgc
ggactggggcaccaggtctgcacggatgcggtgcgcaccatggaccgcgccctggcccgc
gagggcatccagctcgtggaccgtcaactcgcctgtgcgccgctgtcgtcggcggagggg
caggactacttcgcggccatgtgcgccgcggccaacttcgcctgggccaaccggcaggtg
ctcacctaccgggtgcgagaggtgttccgccggtggttcggagaccgttccgctgcgtgg
cctcgcatcgtctatgacgtggcccacaacatcgcgaagttggagccgcatggaggccag
cgcctctgtgtacaccgcaagggcgcgacgcgggccttcggtccagggcaccccgagctg
cccgcggcctaccatcaggtcggccagcccgtgttcatccccggaagcatgggcacggcg
tcgttcgtgctggtggggaaggaggctgccgaggccatctcactcagcagcgcctgccat
ggggcgggacggcggctgagccgggccgcttccaaacgccaggtggtgggaagtgagctg
cgcgcggcgctgaatcgtcagggcatcgccgtggagtgtccctccaatgcggagctcgcg
gaggaagcacccctggcctacaaggacgtggatcgggtggtggacgtggtcgaggcggct
ggcatcgcgcggaaggtggcgcggctggtgccgctcgccgtgttgaaaggctga
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