Mycobacterium xenopi: MYXE_40210
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Entry
MYXE_40210 CDS
T06649
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mxe
Mycobacterium xenopi
Pathway
mxe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mxe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MYXE_40210 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mxe03021
]
MYXE_40210 (rpoC)
03400 DNA repair and recombination proteins [BR:
mxe03400
]
MYXE_40210 (rpoC)
Enzymes [BR:
mxe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MYXE_40210 (rpoC)
Transcription machinery [BR:
mxe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MYXE_40210 (rpoC)
DNA repair and recombination proteins [BR:
mxe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MYXE_40210 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBU24231
UniProt:
A0AAD1M3A1
LinkDB
All DBs
Position
complement(4054033..4057983)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITDVDEELRHNELSTLEAEMATERKQIEDQRDAELEARAQKLEAD
LAQLEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLQEIWDTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAEAIQKLIENFDIDAEAEALREVIRNGKGQKKLRALKRLKVVA
AFQQSSNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDVGEYQ
PATKDSPERGVYSSPAEAIMAMDRGALSVRAKIKVRLSQLRPPIEVEDELFGRNGWRPGD
SWMAETTLGRVMFNELLPMGYPFVNKQMHKKVQATIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPNKQEILDAYEERADKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPDDNPIITIVESGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREADCGTERGITVE
LAERQPDGTLIRDPFIETSAYARTLGVDAVDKDGNVIVERGRDLGDPEIEALLAAGITSV
KVRSVLTCATGMGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDIVSGLPRVQELFEARIPRGKAPIADVSGRVRLEEGDRFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGTERVLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQQ
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGIARYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYGDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcatcggcctggccaccgcggacgacatc
aggcaatggtcgtacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaaa
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tattgcggcaaatacaagcgtgtccgcttcaagggcatcatctgtgagcgctgcggagtg
gaggtcacccgcgccaaggtgcgccgcgagcggatgggccacattgagctggccgcaccg
gtcacccacatctggtacttcaagggcgtgccttcgcggctggggtatctgctcgatttg
gcgcccaaggatctggagaagatcatctacttcgcggcgtatgtcatcaccgacgtcgac
gaggagctgcgccacaacgagctgtccacgctcgaagccgagatggccaccgagcgcaag
cagatcgaggaccagcgcgacgccgagctggaggcgcgtgcccagaagctggaagccgac
ctggcccagctggaggccgagggtgccaaagccgatgcgcggcgcaaggttcgcgacggc
ggcgagcgggagatgcgccagatccgcgaccgcgcgcagcgtgagctggaccggctgcag
gagatctgggacaccttcaccaagctggcccccaagcaactcatcgtcgacgagaacctc
taccgcgaactggtcgaccgctacggcgagtacttcaccggcgccatgggtgcggaggcg
atccagaagctcatcgagaacttcgacatcgacgccgaagccgaggcgctgcgcgaggtt
atccgaaacggcaaggggcagaagaagcttcgcgctctcaagcggttgaaggtggtggct
gcgttccagcagtcgtccaactcgccgatgggcatggtgctcgacgcagtgccggtgatc
ccgccggaactgcggccgatggtgcagctcgacggtggccggttcgccacgtcggatctc
aacgacctgtaccggcgggtgatcaaccgcaacaaccgcctcaagcggctgatcgatctc
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccgggccgggtaaccgcccgctgaag
tctttgagtgatctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgctcggtgatcgtggtcggcccgcagctcaaactgcaccag
tgcggcctgcccaagctgatggcactcgagctgttcaagccgttcgtgatgaagcggctg
gtcgatctcaaccacgcgcaaaacatcaagagtgccaagcggatggtggagcgtcagcgc
ccgcaagtgtgggatgtgctcgaagaggtcatcgccgagcacccggtgctgttgaaccgc
gcaccgaccctgcaccggctgggcatccaggctttcgagccaatgctgatcgaaggcaag
gcgattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgatcag
atggcggtgcacctgccgttgagcgccgaggcgcaggccgaggcccgcatcctgatgctg
tcgagcaacaacatcctgtcgccggcgtcgggccgtccgctggccatgccgcggctggac
atggtgaccgggttgtactacctgaccaccgaggtgcccggcgacgtcggcgaataccag
cccgccaccaaggattcgcccgagcgtggcgtgtacagctcgccagccgaggcgatcatg
gcgatggaccgcggcgctttgagcgtgcgggccaagatcaaggtgcggttgagccagctg
cgcccgcccatcgaagtcgaggacgagctgttcggccgaaacggttggcgcccaggggat
tcctggatggcggagaccacgctgggccgggtgatgttcaatgaactgctgccgatgggt
taccccttcgtcaacaagcagatgcacaagaaggtgcaggccaccatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcccagaccgtcgacaagctcaaggacgccggc
ttctactgggccacgcgatccggtgtgacggtgtcgatggccgacgtgctggtgccgccg
aacaagcaggagatcctcgacgcctacgaggagcgggccgacaaggtcgaaaagcagttc
cagcgaggcgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtgggtcaggcgctgcgcgagcactacccggacgacaacccgatcatc
acgatcgtcgagtccggtgccaccggtaacttcacccagacccgcacgctggcggggatg
aagggattggtgaccaacccgaagggtgagttcattccgcgcccgatcaagtcgtcgttc
cgtgagggcctgaccgtgttggagtacttcatcaacacccacggcgcgcggaaaggcttg
gccgacacagcattgcggaccgccgactctgggtatttgactcgccggctggtggacgtg
agccaggatgtcatcgtccgcgaggcggactgcggcaccgagcgcgggatcaccgttgag
ctggccgagcggcagcccgacggcacacttatccgcgacccgttcatcgagacctcggcg
tacgcgcgcacattgggcgtcgacgcggtcgacaaagacggcaacgtcatcgtcgagcgc
ggtcgcgacctgggcgacccggagatcgaggcgctgttggcggcgggcatcacgtcggtg
aaggtgcgctcggtgctgacgtgcgcgaccggcatgggtgtgtgcgcgacctgctacggg
cggtccatggcaaccggcaagctcgtcgacatcggcgaggcggtgggaatcgttgctgcg
cagtcgatcggtgagccgggcacgcagctgactatgcgcacgttccaccagggtggtgtc
ggtgaggacatcgtcagcggtctgccgcgggtgcaggagctgttcgaggcccggattccg
cgcggcaaggcgccgatcgccgacgtcagcggacgggtgcggctggaggagggcgaccgc
ttctacaagatcaccatcgtccccgacgacggcggcgaggaagtggtgtacgacaagctc
tccaagcgccagcggctgcgggtcttcaagcacgaagacggcaccgaacgggtgctcgcc
gacggcgaccacgtggaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgggtgcagggcccgcgcgaggtgcagatccacctggtcaaggaggtccagcag
gtctaccgggcgcagggcgtgtcgatccacgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgggtgacgatcatcgactcgggctcgacggagttcctgcccggttcgctg
atcgaccgggccgagttcgaggccgagaaccgacgggtggtggccgagggcggcgagccc
gccgccggccgtccggtgttgatggggatcaccaaggcgtcgctggccaccgactcgtgg
ctgtcggcggcgtcgttccaggagaccacgcgagtgttgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggtaccggaatcgcccgctaccgcaacatccaggtgcagccgaccgaggaggcccgggcc
gcggcgtacacgatcccgtcgtacgaggaccagtactacagcccggacttcggccaggcc
accggtgccgcggtcccgctggacgactacggttacggcgactaccgctaa
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